RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Score = 174 bits (441), Expect = 2e-44 Identities = 78/413 (18%), Positives = 152/413 (36%), Gaps = 65/413 (15%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 + + +GG AP ++I + + K P ++L ++ G GLL +DKI +TE + + Sbjct: 71 NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS- 129 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 + GG I +S R I+ +E+ + ++ + + IGGDD+ Sbjct: 130 --YRNTGGFDIVSSG-----------RTKIETEEH-YNKALFVAKENNLNAIIIIGGDDS 175 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--QSLGALTAAQVSACFFDNISNER 208 NT A L Y K+ NI V+G+PKTID D+ H S G +A ++ + N+ + Sbjct: 176 NTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDA 235 Query: 209 SATPRSLIIHEVMGRNCGWLTAYSA---HCYLNMIQDRNYIDGFIFSPDF---------- 255 +T + ++MGR+ + A H + ++ + S Sbjct: 236 MSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKR 295 Query: 256 ----KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEK- 310 V +PE E++ L + +G + + + ++ Sbjct: 296 SLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDY 355 Query: 311 --------------------IKRDSFGHILLDKMNVGSWFADKFANMIKAERS------- 343 ++RD G+ + ++ F + + + + Sbjct: 356 MKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGS 415 Query: 344 ---IVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNI 393 + GY RSA + D + AV ++G++G + N Sbjct: 416 FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 468 >d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Score = 117 bits (293), Expect = 3e-27 Identities = 75/354 (21%), Positives = 135/354 (38%), Gaps = 75/354 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K+ LT+GG AP +++ I ++ + + E++ GY GL D + + R + Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLD---RYSV 58 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 +++ GG+ +G++R +DEN V+ +L + G+ L IGGD + Sbjct: 59 SDMINRGGTFLGSARFP------------EFRDENIRAVAIENLKKRGIDALVVIGGDGS 106 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A + +GLP TIDNDI ++G TA D + + S+ Sbjct: 107 YMGAM------RLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS 160 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 R + + EVMGR CG LT +A V +PE+ F+ Sbjct: 161 HQR-ISVVEVMGRYCGDLTLAAAIAGGCEF--------------------VVVPEVEFSR 199 Query: 271 EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 E + + + + K + ++E C + + + ++ R++ +L Sbjct: 200 EDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIE--KETGRETRATVL--------- 248 Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 G+ R D L +M A+D ++G G Sbjct: 249 -------------------GHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR 283 >d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Score = 106 bits (266), Expect = 3e-24 Identities = 69/354 (19%), Positives = 123/354 (34%), Gaps = 75/354 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 ++ LT+GG +P +++ I ++ I E+ GY GL+ + + + Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKA--IYHGVEVYGVYHGYAGLIAGNIKKLE---VGDV 57 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 ++ GG+ + +R + K+G L + G+ L IGGD + Sbjct: 58 GDIIHRGGTILYTARCPEFKTEEGQKKG------------IEQLKKHGIQGLVVIGGDGS 105 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A L + VG+P TIDNDI ++G TA D I + + Sbjct: 106 YQGAKKL------TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI-RDTAT 158 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 + + EVMGR+ G + +S G + + +PE +++ Sbjct: 159 SHERTYVIEVMGRHAGDIALWSGLAG--------------------GAETILIPEADYDM 198 Query: 271 EVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 I RL + E+ K I V+EG V ++ + Sbjct: 199 NDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATGFE----------------- 241 Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 + V G+ R + D L ++ AV+ + G G Sbjct: 242 -------------TRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGR 282 >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 Score = 30.9 bits (69), Expect = 0.19 Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 17/120 (14%) Query: 139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA 198 + ++ G + + + + Y + P + ND + + Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDT--------QVNTEYMVN 85 Query: 199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFI-FSPDFKG 257 + ++ G G + + + ++ +D + F+PD+KG Sbjct: 86 -AITALYAGSGNNKLPVLTWS-QG---GLVAQWGLTFFPSIRS---KVDRLMAFAPDYKG 137 >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 Score = 28.3 bits (62), Expect = 1.4 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%) Query: 221 MGRNCGWLTA--YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL- 277 +GR TA + + + + + G + + E++F E+ Sbjct: 194 LGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFG 253 Query: 278 SKVM 281 +KV+ Sbjct: 254 AKVL 257 >d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267 Score = 27.9 bits (62), Expect = 1.7 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 7/60 (11%) Query: 143 HTIGGDDTNTTACDLLRYL--KEKNYNITVVGLPKTIDNDIIPIH-QSLGA----LTAAQ 195 + ++ T L Y + V LPK +D + H L LT Q Sbjct: 189 PSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQ 248 >d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]} Length = 525 Score = 27.4 bits (60), Expect = 2.2 Identities = 10/99 (10%), Positives = 27/99 (27%) Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204 +G + A ++ R L++ Y++ + ++ L S + + Sbjct: 212 LGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEM 271 Query: 205 SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243 + P + L + + R Sbjct: 272 METKYGIPWIKCNFIGVDGIVETLRDMAKCFDDPELTKR 310 >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Length = 351 Score = 25.5 bits (54), Expect = 7.8 Identities = 5/29 (17%), Positives = 15/29 (51%) Query: 157 LLRYLKEKNYNITVVGLPKTIDNDIIPIH 185 + +L + + + +G ++ D++P H Sbjct: 20 VAHHLMAQGWQVRWLGTADRMEADLVPKH 48 >d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis [TaxId: 1773]} Length = 726 Score = 25.3 bits (55), Expect = 8.6 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 6 SYISNLDMWILTGVLSFLEKDMVAH-KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAEL 64 MW +T +++ + + +A + TA +P +++ + + + + L Sbjct: 507 RAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 566 Query: 65 IYYRFGYQGLLLDDKIT---------ITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSD 113 R LL + I E++ N + +L Y + G K+ + D Sbjct: 567 AGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHD 626 Query: 114 CIKRGLIKKDENPLEVSAHHLMQ 136 L+ +D L +S+ L Sbjct: 627 ---VALM-EDRATLRISSQLLAN 645 >d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein {AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]} Length = 102 Score = 25.5 bits (56), Expect = 9.1 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 9/57 (15%) Query: 119 LIKKDENPLEVSA---HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172 + +DEN L+ ++L + GV G + LR L + Y+ G Sbjct: 11 INSEDENVLDFIIEDEYYLKKRGV------GAHIIKVASSPQLRLLYKNAYSTVSCG 61 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,590,847 Number of extensions: 75070 Number of successful extensions: 237 Number of sequences better than 10.0: 1 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 18 Length of query: 426 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 338 Effective length of database: 1,199,356 Effective search space: 405382328 Effective search space used: 405382328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.1 bits)