RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
(426 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 174 bits (441), Expect = 2e-44
Identities = 78/413 (18%), Positives = 152/413 (36%), Gaps = 65/413 (15%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
+ + +GG AP ++I + + K P ++L ++ G GLL +DKI +TE + +
Sbjct: 71 NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS- 129
Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
+ GG I +S R I+ +E+ + ++ + + IGGDD+
Sbjct: 130 --YRNTGGFDIVSSG-----------RTKIETEEH-YNKALFVAKENNLNAIIIIGGDDS 175
Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--QSLGALTAAQVSACFFDNISNER 208
NT A L Y K+ NI V+G+PKTID D+ H S G +A ++ + N+ +
Sbjct: 176 NTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDA 235
Query: 209 SATPRSLIIHEVMGRNCGWLTAYSA---HCYLNMIQDRNYIDGFIFSPDF---------- 255
+T + ++MGR+ + A H + ++ + S
Sbjct: 236 MSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKR 295
Query: 256 ----KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEK- 310
V +PE E++ L + +G + + + ++
Sbjct: 296 SLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDY 355
Query: 311 --------------------IKRDSFGHILLDKMNVGSWFADKFANMIKAERS------- 343
++RD G+ + ++ F + + + +
Sbjct: 356 MKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGS 415
Query: 344 ---IVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNI 393
+ GY RSA + D + AV ++G++G + N
Sbjct: 416 FTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 468
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 117 bits (293), Expect = 3e-27
Identities = 75/354 (21%), Positives = 135/354 (38%), Gaps = 75/354 (21%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
K+ LT+GG AP +++ I ++ + + E++ GY GL D + + R +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLD---RYSV 58
Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
+++ GG+ +G++R +DEN V+ +L + G+ L IGGD +
Sbjct: 59 SDMINRGGTFLGSARFP------------EFRDENIRAVAIENLKKRGIDALVVIGGDGS 106
Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
A + +GLP TIDNDI ++G TA D + + S+
Sbjct: 107 YMGAM------RLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS 160
Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
R + + EVMGR CG LT +A V +PE+ F+
Sbjct: 161 HQR-ISVVEVMGRYCGDLTLAAAIAGGCEF--------------------VVVPEVEFSR 199
Query: 271 EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
E + + + + K + ++E C + + + ++ R++ +L
Sbjct: 200 EDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIE--KETGRETRATVL--------- 248
Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
G+ R D L +M A+D ++G G
Sbjct: 249 -------------------GHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR 283
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 106 bits (266), Expect = 3e-24
Identities = 69/354 (19%), Positives = 123/354 (34%), Gaps = 75/354 (21%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
++ LT+GG +P +++ I ++ I E+ GY GL+ + + +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKA--IYHGVEVYGVYHGYAGLIAGNIKKLE---VGDV 57
Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
++ GG+ + +R + K+G L + G+ L IGGD +
Sbjct: 58 GDIIHRGGTILYTARCPEFKTEEGQKKG------------IEQLKKHGIQGLVVIGGDGS 105
Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
A L + VG+P TIDNDI ++G TA D I + +
Sbjct: 106 YQGAKKL------TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI-RDTAT 158
Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
+ + EVMGR+ G + +S G + + +PE +++
Sbjct: 159 SHERTYVIEVMGRHAGDIALWSGLAG--------------------GAETILIPEADYDM 198
Query: 271 EVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
I RL + E+ K I V+EG V ++ +
Sbjct: 199 NDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATGFE----------------- 241
Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
+ V G+ R + D L ++ AV+ + G G
Sbjct: 242 -------------TRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGR 282
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 30.9 bits (69), Expect = 0.19
Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA 198
+ ++ G + + + + Y + P + ND + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDT--------QVNTEYMVN 85
Query: 199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFI-FSPDFKG 257
+ ++ G G + + + ++ +D + F+PD+KG
Sbjct: 86 -AITALYAGSGNNKLPVLTWS-QG---GLVAQWGLTFFPSIRS---KVDRLMAFAPDYKG 137
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 28.3 bits (62), Expect = 1.4
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 221 MGRNCGWLTA--YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL- 277
+GR TA + + + + + G + + E++F E+
Sbjct: 194 LGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFG 253
Query: 278 SKVM 281
+KV+
Sbjct: 254 AKVL 257
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein
hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 27.9 bits (62), Expect = 1.7
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 143 HTIGGDDTNTTACDLLRYL--KEKNYNITVVGLPKTIDNDIIPIH-QSLGA----LTAAQ 195
+ ++ T L Y + V LPK +D + H L LT Q
Sbjct: 189 PSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQ 248
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 27.4 bits (60), Expect = 2.2
Identities = 10/99 (10%), Positives = 27/99 (27%)
Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204
+G + A ++ R L++ Y++ + ++ L S + +
Sbjct: 212 LGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEM 271
Query: 205 SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
+ P + L + + R
Sbjct: 272 METKYGIPWIKCNFIGVDGIVETLRDMAKCFDDPELTKR 310
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 25.5 bits (54), Expect = 7.8
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 157 LLRYLKEKNYNITVVGLPKTIDNDIIPIH 185
+ +L + + + +G ++ D++P H
Sbjct: 20 VAHHLMAQGWQVRWLGTADRMEADLVPKH 48
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 25.3 bits (55), Expect = 8.6
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 6 SYISNLDMWILTGVLSFLEKDMVAH-KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAEL 64
MW +T +++ + + +A + TA +P +++ + + + + L
Sbjct: 507 RAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 566
Query: 65 IYYRFGYQGLLLDDKIT---------ITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSD 113
R LL + I E++ N + +L Y + G K+ + D
Sbjct: 567 AGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHD 626
Query: 114 CIKRGLIKKDENPLEVSAHHLMQ 136
L+ +D L +S+ L
Sbjct: 627 ---VALM-EDRATLRISSQLLAN 645
>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein
{AcMNPV (Autographa californica nuclear polyhedrosis
virus) [TaxId: 46015]}
Length = 102
Score = 25.5 bits (56), Expect = 9.1
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 119 LIKKDENPLEVSA---HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172
+ +DEN L+ ++L + GV G + LR L + Y+ G
Sbjct: 11 INSEDENVLDFIIEDEYYLKKRGV------GAHIIKVASSPQLRLLYKNAYSTVSCG 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,590,847
Number of extensions: 75070
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 18
Length of query: 426
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,199,356
Effective search space: 405382328
Effective search space used: 405382328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)