HHsearch alignment for GI: 254780228 and conserved domain: COG2899

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=100.00  E-value=0  Score=633.55  Aligned_cols=335  Identities=41%  Similarity=0.801  Sum_probs=323.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             79987669999999999999998763365302467789999999999999869899999999862999999899999999
Q gi|254780228|r    9 SLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGIL   88 (346)
Q Consensus         9 ~~~~~f~ws~~~~~lal~f~~~i~~~~g~~~~~~~~a~~i~~~L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIl   88 (346)
T Consensus         2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~---~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIl   78 (346)
T COG2899           2 TAFRYFGWSFIVTVIALALAAWLGYEYGGT---MWTALFICAVLAVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGIL   78 (346)
T ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             417642549999999999987775762473---49999999999996301021187861898875369999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             99999999999999999842006899887402501466777641128999999999999999851155444200134445
Q gi|254780228|r   89 IAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIA  168 (346)
Q Consensus        89 gAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~  168 (346)
T Consensus        79 IAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~~iE~~  158 (346)
T COG2899          79 IAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERP  158 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99976488777889888617790899998706937789999855830556400899999988731840013366668789


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             555212110136789998765320237664-0101000000124332100011103554434311234699999999998
Q gi|254780228|r  169 MSHLSKIKGIKIFIVLSIIFGISNILPTNE-MYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEII  247 (346)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpl~~~li~IE~~  247 (346)
T Consensus       159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL  238 (346)
T COG2899         159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL  238 (346)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf             98744778702089999999999883475544304297799999999999842285428888766521325678889887


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHH
Q ss_conf             87875411134552132099999999999999999999999987998610024789999999999999842-20288258
Q gi|254780228|r  248 DASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIF  326 (346)
Q Consensus       248 D~~FA~DSVpAafAIT~dpfIV~~g~~~gilglRslt~yFv~~g~l~~f~yLe~ga~~~l~~igvkmll~~-~~~iPe~~  326 (346)
T Consensus       239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv  318 (346)
T COG2899         239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV  318 (346)
T ss_pred             HHHCCCCCEEEEEEECCCCHHHEECCCHHHEEEEEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHH
T ss_conf             31001265233320015720310003213034251588988637287778775035899999999999851004237899


Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999974239
Q gi|254780228|r  327 TGTSSTILIFLSIYSSIKNK  346 (346)
Q Consensus       327 s~~i~~~~i~~~i~~Si~~k  346 (346)
T Consensus       319 TgL~Ga~fIgls~~sSv~~N  338 (346)
T COG2899         319 TGLVGAVFIGLSLWSSVRYN  338 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             87667999999999999986