Query gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs 131 out of 603
Neff 5.8
Searched_HMMs 39220
Date Mon May 23 21:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780228.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2899 Uncharacterized protei 100.0 0 0 633.6 18.3 335 9-346 2-338 (346)
2 pfam04332 DUF475 Protein of un 100.0 0 0 577.2 17.0 285 61-346 1-291 (294)
3 COG0861 TerC Membrane protein 100.0 0 0 311.0 25.7 236 27-345 2-244 (254)
4 pfam03741 TerC Integral membra 100.0 2.4E-44 0 293.9 21.8 181 52-317 3-183 (184)
5 COG0861 TerC Membrane protein 97.2 0.016 4.1E-07 34.2 14.3 76 54-160 142-217 (254)
6 pfam03741 TerC Integral membra 96.9 0.033 8.3E-07 32.2 14.7 71 54-155 114-184 (184)
7 pfam01914 MarC MarC family int 96.7 0.041 1.1E-06 31.6 17.6 84 56-160 13-96 (203)
8 PRK10995 multiple drug resista 96.4 0.065 1.7E-06 30.4 19.5 85 54-159 15-99 (222)
9 PRK11469 hypothetical protein; 94.8 0.27 6.8E-06 26.6 20.4 94 37-157 15-108 (206)
10 PRK10739 putative dITP- and XT 94.5 0.32 8.2E-06 26.1 17.6 83 57-160 14-96 (197)
11 TIGR00949 2A76 Homoserine/Thre 93.6 0.49 1.3E-05 24.9 13.1 25 129-153 50-74 (194)
12 PRK10229 threonine efflux syst 89.1 1.5 3.7E-05 22.0 16.8 27 131-157 69-95 (206)
13 PRK11111 hypothetical protein; 88.4 1.6 4.2E-05 21.7 19.4 83 55-158 18-100 (214)
14 pfam03596 Cad Cadmium resistan 87.8 1.1 2.7E-05 22.8 4.6 80 58-160 3-82 (192)
15 COG2095 MarC Multiple antibiot 87.7 1.8 4.6E-05 21.4 18.3 87 55-162 15-101 (203)
16 TIGR00427 TIGR00427 conserved 86.1 2.2 5.6E-05 20.9 7.6 91 57-168 20-110 (206)
17 PRK10520 rhtB homoserine/homos 81.6 3.4 8.7E-05 19.7 16.3 28 131-158 70-97 (205)
18 COG4300 CadD Predicted permeas 79.1 4.1 0.00011 19.2 6.9 83 54-160 10-93 (205)
19 PRK10807 paraquat-inducible pr 68.1 1.9 4.8E-05 21.3 0.6 34 1-34 1-36 (546)
20 PRK10323 neutral amino-acid ef 64.3 9.1 0.00023 17.0 18.8 31 129-159 68-98 (195)
21 pfam01810 LysE LysE type trans 62.9 9.7 0.00025 16.9 18.1 28 131-158 57-84 (191)
22 COG2119 Predicted membrane pro 60.7 11 0.00027 16.6 5.9 72 62-158 18-89 (190)
23 COG2155 Uncharacterized conser 55.0 8.3 0.00021 17.3 2.0 32 129-160 42-73 (79)
24 COG1971 Predicted membrane pro 54.7 13 0.00034 16.0 19.4 83 54-158 8-91 (190)
25 COG1280 RhtB Putative threonin 48.4 17 0.00043 15.4 17.6 31 129-159 68-98 (208)
26 pfam02158 Neuregulin Neureguli 46.8 8.6 0.00022 17.2 1.0 17 76-92 3-20 (406)
27 pfam11947 DUF3464 Protein of u 40.3 22 0.00057 14.6 3.7 24 317-340 85-108 (149)
28 pfam06570 DUF1129 Protein of u 37.1 25 0.00064 14.3 10.1 16 322-337 178-193 (206)
29 TIGR00779 cad cadmium resistan 33.7 26 0.00067 14.2 1.8 81 58-160 3-83 (196)
30 COG3008 PqiB Paraquat-inducibl 31.2 16 0.0004 15.6 0.3 33 3-35 7-41 (553)
31 pfam00599 Flu_M2 Influenza Mat 30.3 32 0.00083 13.6 4.4 17 263-280 22-38 (97)
32 TIGR01522 ATPase-IIA2_Ca calci 30.0 31 0.00079 13.7 1.7 24 322-346 281-304 (856)
33 PRK11098 transport protein; Re 28.4 35 0.00089 13.4 7.1 128 11-149 10-153 (408)
34 KOG2762 consensus 27.7 28 0.00071 14.0 1.1 35 253-287 311-346 (429)
35 KOG2881 consensus 27.1 37 0.00094 13.3 8.8 86 56-159 70-162 (294)
36 TIGR01481 ccpA catabolite cont 25.7 16 0.0004 15.6 -0.5 29 275-303 297-325 (332)
37 KOG2297 consensus 23.2 44 0.0011 12.8 2.9 10 72-81 140-149 (412)
38 pfam08122 NDUF_B12 NADH-ubiqui 22.3 45 0.0012 12.7 2.5 25 135-159 30-54 (57)
No 1
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=0 Score=633.55 Aligned_cols=335 Identities=41% Similarity=0.801 Sum_probs=323.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 79987669999999999999998763365302467789999999999999869899999999862999999899999999
Q gi|254780228|r 9 SLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGIL 88 (346)
Q Consensus 9 ~~~~~f~ws~~~~~lal~f~~~i~~~~g~~~~~~~~a~~i~~~L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIl 88 (346)
+..++|+||+..|.++++.++|.+|.++++ ...+.++|.+|+++|.|||+||++|||.++++|+|+||||+|+|||+
T Consensus 2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~---~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIl 78 (346)
T COG2899 2 TAFRYFGWSFIVTVIALALAAWLGYEYGGT---MWTALFICAVLAVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGIL 78 (346)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 417642549999999999987775762473---49999999999996301021187861898875369999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999999999999999842006899887402501466777641128999999999999999851155444200134445
Q gi|254780228|r 89 IAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIA 168 (346)
Q Consensus 89 gAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~ 168 (346)
+|+||||++||++||+++++++|++++.+|+.+|++|++.+.++||.|.+|||.||+|+++|+|+|+|||.||++|+|++
T Consensus 79 IAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~~iE~~ 158 (346)
T COG2899 79 IAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERP 158 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99976488777889888617790899998706937789999855830556400899999988731840013366668789
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 555212110136789998765320237664-0101000000124332100011103554434311234699999999998
Q gi|254780228|r 169 MSHLSKIKGIKIFIVLSIIFGISNILPTNE-MYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEII 247 (346)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpl~~~li~IE~~ 247 (346)
+.|+++.++.++.++...++..+...+.+. ...++.+++.|..+|..++.++...+..++.....++.++..|+|+|+.
T Consensus 159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL 238 (346)
T COG2899 159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL 238 (346)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98744778702089999999999883475544304297799999999999842285428888766521325678889887
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHH
Q ss_conf 87875411134552132099999999999999999999999987998610024789999999999999842-20288258
Q gi|254780228|r 248 DASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIF 326 (346)
Q Consensus 248 D~~FA~DSVpAafAIT~dpfIV~~g~~~gilglRslt~yFv~~g~l~~f~yLe~ga~~~l~~igvkmll~~-~~~iPe~~ 326 (346)
|++||+|+|+++||+|+||+||..|+++|+|++||+|+|.|+||+||+|+||||||+|+|+.+++.|++++ .+||||++
T Consensus 239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv 318 (346)
T COG2899 239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV 318 (346)
T ss_pred HHHCCCCCEEEEEEECCCCHHHEECCCHHHEEEEEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHH
T ss_conf 31001265233320015720310003213034251588988637287778775035899999999999851004237899
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999974239
Q gi|254780228|r 327 TGTSSTILIFLSIYSSIKNK 346 (346)
Q Consensus 327 s~~i~~~~i~~~i~~Si~~k 346 (346)
|+++++++|+.|+++|+||+
T Consensus 319 TgL~Ga~fIgls~~sSv~~N 338 (346)
T COG2899 319 TGLVGAVFIGLSLWSSVRYN 338 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 87667999999999999986
No 2
>pfam04332 DUF475 Protein of unknown function (DUF475). Predicted to be an integral membrane protein with multiple membrane spans.
Probab=100.00 E-value=0 Score=577.24 Aligned_cols=285 Identities=41% Similarity=0.791 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 98999999998629999998999999999999999999999999984200689988740250146677764112899999
Q gi|254780228|r 61 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFG 140 (346)
Q Consensus 61 vDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~g 140 (346)
+|||+|||.++++|+++||||||+|||++||||||++||+++|++++++||+|++++|+++|++|++.++++||.|++||
T Consensus 1 FDNAVVNA~vLk~Ms~~Wqk~FLt~GIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lAl~~p~~Y~~~l~~ahp~IaaFG 80 (294)
T pfam04332 1 FDNAVVNASILKRMSPFWQKMFLTIGILIAVFGMRLIFPLVIVAVSAGLDPIEAMKLALENPDRYEELLTAAHPSIAAFG 80 (294)
T ss_pred CCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf 97201118878643699999999981999989888766578876527889899999983697889999984368899885
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999985115544420013444555521211013678999876532023--766401010000001243321000
Q gi|254780228|r 141 GTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNIL--PTNEMYSFVSSSTAAIIIFYGINF 218 (346)
Q Consensus 141 G~fLl~~~lk~~~~~~~e~~w~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 218 (346)
|+||+|+++++++| |||.||++|+||++.|.|+.++.++.+++..+.....++ |+++...++.++..|..+|...++
T Consensus 81 G~FLlmvfL~fffd-ek~~~Wl~~iE~~l~k~g~~~~~~v~i~l~~ll~~~~~~~~~~~~~~~vl~ag~~Gl~~y~~v~~ 159 (294)
T pfam04332 81 GMFLLMVFLDFFFD-DRDIKWLKWIERPLARIGKLDAISAIIVFVLLLIFAFFFTAPAEQFQTVLFAGLLGLLTYLLVDG 159 (294)
T ss_pred HHHHHHHHHHHHCC-CCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987020-66365436987999872771212999999999999998336401568999999999999999999
Q ss_pred HHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11103554434---311234699999999998878754111345521320999999999999999999999999879986
Q gi|254780228|r 219 LESVLSSDSSN---NVTHGKHGLNLFLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNK 295 (346)
Q Consensus 219 ~~~~~~~~~~~---~~~~~tpl~~~li~IE~~D~~FA~DSVpAafAIT~dpfIV~~g~~~gilglRslt~yFv~~g~l~~ 295 (346)
+++.+++++++ ....++.++..++|+|++|++||+|||++|||+|+|++||++|+++|+|++||||+|+|++|+|++
T Consensus 160 l~~~~~~~~~~~~~~~~~~k~g~~~FLYLEVLDASFSFDGVIGAFAiT~~i~iI~iGLGIGAmfVRSlTi~lV~kgtL~~ 239 (294)
T pfam04332 160 FGRLFEPDGSPTGAVRAAGKAGLALFLYLEVLDASFSFDGVIGAFAITNDIVIIALGLGIGAMFVRSLTVYLVRKGTLDD 239 (294)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHHCCHHHEEEEEEEEEEEECCHHHH
T ss_conf 99882556776334434468899999999998611021543101355125799996021342100402567554470877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 100247899999999999998422-028825899999999999999974239
Q gi|254780228|r 296 YKYLEHGSYYSIFVLSVIMFLQTI-VDIPEIFTGTSSTILIFLSIYSSIKNK 346 (346)
Q Consensus 296 f~yLe~ga~~~l~~igvkmll~~~-~~iPe~~s~~i~~~~i~~~i~~Si~~k 346 (346)
|+||||||+|+|+.+++.|++++. +|+|||+|+++++++|++++++|+|++
T Consensus 240 Y~YLEHGA~yAIg~LavIMl~~~~~~~iPE~iTgliG~~~Ig~a~~sSi~~n 291 (294)
T pfam04332 240 YVYLEHGAHYAIGALAVIMLLSIRRIEIPEVVTGLVGVVFIGASLWSSVIRN 291 (294)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6777313899999999999876146357468886779999999999999987
No 3
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=311.01 Aligned_cols=236 Identities=18% Similarity=0.245 Sum_probs=192.4
Q ss_pred HHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999987633653024--677899999999999998698999999998629999998999999999999999999999999
Q gi|254780228|r 27 CGLGIGWQFTHTLSG--TISTVYICIILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVC 104 (346)
Q Consensus 27 f~~~i~~~~g~~~~~--~~~a~~i~~~L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~ 104 (346)
|+.+.++..+.++.. ++.|++. +|++||.||++|.+.+++++|++||||+++||+.+|+ +||+++...+++
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~------lE~vL~iDN~iviai~~~~Lp~~qr~kal~~Gl~~A~-v~R~~ll~~~s~ 74 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLIL------LEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGAL-VLRIILLASISW 74 (254)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 408999998527168999999999------9999872499999999823899998799999999999-999999999999
Q ss_pred HHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98420068998874025014667776411289999999999999998511554442001344455552121101367899
Q gi|254780228|r 105 IVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVL 184 (346)
Q Consensus 105 ~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~~~~~~~~~~~~~~~~l 184 (346)
+.. ..+|+.+.||.+|+|+++|++.+++++.. +...+.
T Consensus 75 Ll~------------------------l~~~l~~~fg~~L~~~~~~ll~~~~~~~~--k~~~~~---------------- 112 (254)
T COG0861 75 LLT------------------------LTQPLLYIFGLYLLWRDIKLLLGGLFLLF--KATKEL---------------- 112 (254)
T ss_pred HHH------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHH----------------
T ss_conf 998------------------------03899999999999999999724303777--889887----------------
Q ss_pred HHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98765320237664010100000012433210001110355443431123469999999999887875411134552132
Q gi|254780228|r 185 SIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDASLSLDGVISSFAITK 264 (346)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpl~~~li~IE~~D~~FA~DSVpAafAIT~ 264 (346)
...+++.++.. +++.+ ..||+|.++..||++|++||+|||||++|+|+
T Consensus 113 -------------------------~~~~~~~~~~~-----~~~~~--~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~~ 160 (254)
T COG0861 113 -------------------------HERLEGEEFFV-----NGKLK--KATPFWGAIIQIELADLVFSLDSVIAAVGMAG 160 (254)
T ss_pred -------------------------HHHHCCCCCCC-----CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -------------------------65305630111-----34321--26859999999999999986538999999946
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCC-HHHHHHHHHHHHHHHH
Q ss_conf 0999999999999999999999999879986100247899999999999998422----0288-2589999999999999
Q gi|254780228|r 265 NFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSVIMFLQTI----VDIP-EIFTGTSSTILIFLSI 339 (346)
Q Consensus 265 dpfIV~~g~~~gilglRslt~yFv~~g~l~~f~yLe~ga~~~l~~igvkmll~~~----~~iP-e~~s~~i~~~~i~~~i 339 (346)
||+++++||++|+.++|.+ ++...+.+||||++|+++...++++|+||+++.. +|+| ..++..++.+.+...+
T Consensus 161 ~~~im~~a~i~aI~~m~~a--a~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~ip~~~~~~~v~f~vl~~~~ 238 (254)
T COG0861 161 HPFVMVTAVIFAILVMRFA--AFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELL 238 (254)
T ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8559999999999999999--99999999986389999999999999999996010114317806899999999999999
Q ss_pred HHHHHC
Q ss_conf 997423
Q gi|254780228|r 340 YSSIKN 345 (346)
Q Consensus 340 ~~Si~~ 345 (346)
..|.+.
T Consensus 239 ~~~~~~ 244 (254)
T COG0861 239 NISARK 244 (254)
T ss_pred HHHHHH
T ss_conf 999886
No 4
>pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions.
Probab=100.00 E-value=2.4e-44 Score=293.91 Aligned_cols=181 Identities=23% Similarity=0.315 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998698999999998629999998999999999999999999999999984200689988740250146677764
Q gi|254780228|r 52 LAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQ 131 (346)
Q Consensus 52 L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~ 131 (346)
+.++|++||+||++|++.+++++|+++|||+++||+.||+ ++|.+|+..++++. +
T Consensus 3 l~~lE~vLs~DN~ivial~~~~lP~~~r~~al~~Gi~~A~-v~R~i~i~~~~~ll------------------------~ 57 (184)
T pfam03741 3 LYLLEISLSVDNAFVIALIFRKLPPEQQKKALFWGIIGAL-VLRIILILLGSALL------------------------E 57 (184)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------------------H
T ss_conf 0265599885499999999804899999999999999999-99999999999999------------------------9
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHH
Q ss_conf 11289999999999999998511554442001344455552121101367899987653202376640101000000124
Q gi|254780228|r 132 AHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNILPTNEMYSFVSSSTAAII 211 (346)
Q Consensus 132 ~~~~I~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (346)
.+||+.+.||+||+|+++|++.+++++++. +..++
T Consensus 58 ~~~~l~~igg~~Li~~~~k~~~~~~~~~~~-~~~~~-------------------------------------------- 92 (184)
T pfam03741 58 LFDWILLIGGAFLLYTAIKLLRENEEDDEE-NKIVR-------------------------------------------- 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHH--------------------------------------------
T ss_conf 707999999999999999998732344320-02345--------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33210001110355443431123469999999999887875411134552132099999999999999999999999987
Q gi|254780228|r 212 IFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQG 291 (346)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~tpl~~~li~IE~~D~~FA~DSVpAafAIT~dpfIV~~g~~~gilglRslt~yFv~~g 291 (346)
..+++.....+.++.+++.||.+|++||+|||||++|+|+||+++++||.++++++|++ |+..++
T Consensus 93 -------------~~~~~~~~~~~~~~~av~~I~~~DlvFSlDSV~aa~g~t~~~~ii~~~~i~si~~m~~~--~~~~~~ 157 (184)
T pfam03741 93 -------------ELKKVLPVTSSSLWLAVIQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFL--AFLLAK 157 (184)
T ss_pred -------------HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf -------------44301565403799999999999999876289999998135599999999999999999--999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99861002478999999999999984
Q gi|254780228|r 292 ILNKYKYLEHGSYYSIFVLSVIMFLQ 317 (346)
Q Consensus 292 ~l~~f~yLe~ga~~~l~~igvkmll~ 317 (346)
.+||||++|+++...++++|+||+++
T Consensus 158 ~i~~~~~l~~~~~~~L~~ig~kLi~e 183 (184)
T pfam03741 158 LIERFPYLKYLAAAILGFIGVKLLLE 183 (184)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99987699999999999999999608
No 5
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.016 Score=34.16 Aligned_cols=76 Identities=9% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999869899999999862999999899999999999999999999999998420068998874025014667776411
Q gi|254780228|r 54 VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133 (346)
Q Consensus 54 vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~ 133 (346)
+...+.|+||..--..+- .+--+...|.+.|+.+||...-.+. .+.++|
T Consensus 142 i~D~vFSlDSV~Aa~g~~------~~~~im~~a~i~aI~~m~~aa~~l~-------------------------~ll~r~ 190 (254)
T COG0861 142 LADLVFSLDSVIAAVGMA------GHPFVMVTAVIFAILVMRFAAFLLA-------------------------RLLERH 190 (254)
T ss_pred HHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHC
T ss_conf 999998653899999994------6855999999999999999999999-------------------------999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 289999999999999998511554442
Q gi|254780228|r 134 VPISGFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 134 ~~I~~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
|++.+.+..+|+|+|.|+..++-.+.+
T Consensus 191 p~l~~~~~~iL~~IG~kli~~~~~~~~ 217 (254)
T COG0861 191 PTLKYLALVILLFIGVKLILEGLAHFG 217 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 389999999999999999996010114
No 6
>pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions.
Probab=96.86 E-value=0.033 Score=32.24 Aligned_cols=71 Identities=8% Similarity=0.231 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999869899999999862999999899999999999999999999999998420068998874025014667776411
Q gi|254780228|r 54 VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133 (346)
Q Consensus 54 vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~ 133 (346)
+...+.|+||...-..+-+ +--...-|.+.|+.+||...-.+. .+.++|
T Consensus 114 ~~DlvFSlDSV~aa~g~t~------~~~ii~~~~i~si~~m~~~~~~~~-------------------------~~i~~~ 162 (184)
T pfam03741 114 LADLVFSLDSVPAAVGITD------DPFIVITGNIFAILGLRFLAFLLA-------------------------KLIERF 162 (184)
T ss_pred HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHC
T ss_conf 9999987628999999813------559999999999999999999999-------------------------999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2899999999999999985115
Q gi|254780228|r 134 VPISGFGGTFLMMVSLTFFFNS 155 (346)
Q Consensus 134 ~~I~~~gG~fLl~~~lk~~~~~ 155 (346)
|++.+.+..+|.|+|.|+..++
T Consensus 163 ~~l~~~~~~~L~~ig~kLi~eg 184 (184)
T pfam03741 163 PYLKYLAAAILGFIGVKLLLEG 184 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6999999999999999996089
No 7
>pfam01914 MarC MarC family integral membrane protein. Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters.
Probab=96.73 E-value=0.041 Score=31.60 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHH
Q ss_conf 99986989999999986299999989999999999999999999999999842006899887402501466777641128
Q gi|254780228|r 56 EISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVP 135 (346)
Q Consensus 56 E~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~ 135 (346)
=..=-+.|+-+|..+.+.+|++.|+|......+.|. +.=..|-+.|-.+..-+| -.-+.
T Consensus 13 ~iinPig~~pifl~lt~~~~~~~r~~ia~~a~~~a~-~il~~f~~~G~~iL~~fG--------------------Isl~a 71 (203)
T pfam01914 13 AIINPIGNVPVFISLTENYPAEERKRIILRASIIAF-LILLLFLVFGKLILKLFG--------------------ISIDA 71 (203)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC--------------------CCHHH
T ss_conf 998463479999998589999999999999999999-999999999999999968--------------------87999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999998511554442
Q gi|254780228|r 136 ISGFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 136 I~~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
...-||..|+..+++|.+.+.++.+
T Consensus 72 frIaGGiiL~~ial~ml~~~~~~~~ 96 (203)
T pfam01914 72 FRIAGGILLFLIAIDMLFGKQSKEK 96 (203)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9998289999999999658655333
No 8
>PRK10995 multiple drug resistance protein MarC; Provisional
Probab=96.42 E-value=0.065 Score=30.37 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999869899999999862999999899999999999999999999999998420068998874025014667776411
Q gi|254780228|r 54 VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133 (346)
Q Consensus 54 vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~ 133 (346)
..=..=-+-|+-+|....+.+|++.|+|.-....+.|. +.=++|-+.|-.+..-+|- .-
T Consensus 15 Lf~IinPig~~PiFlslt~~~~~~~r~~ia~~a~~~a~-~iLl~f~~~G~~iL~~fGI--------------------sl 73 (222)
T PRK10995 15 LLPLANPLTTVALFLGLSGNMTSEERNRQSLMASVYVF-AIMMVAFYAGQLVMDTFGI--------------------SI 73 (222)
T ss_pred HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC--------------------CH
T ss_conf 99996713069999998489999999999999999999-9999999989999999699--------------------89
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 28999999999999999851155444
Q gi|254780228|r 134 VPISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 134 ~~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
+....-||..|...+++|.+.+.++.
T Consensus 74 ~afrIaGGiiL~~ia~~Ml~~~~~~~ 99 (222)
T PRK10995 74 PGLRIAGGLIVAFIGFRMLFPQQKAE 99 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999853555443
No 9
>PRK11469 hypothetical protein; Provisional
Probab=94.85 E-value=0.27 Score=26.56 Aligned_cols=94 Identities=7% Similarity=0.084 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 53024677899999999999998698999999998629999998999999999999999999999999984200689988
Q gi|254780228|r 37 HTLSGTISTVYICIILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMN 116 (346)
Q Consensus 37 ~~~~~~~~a~~i~~~L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~ 116 (346)
......+.+..+ +-.+||.|.--|=...=..++..-.++.+..+..... +-.++|++|-.+...+
T Consensus 15 ~~~~M~~~~i~l------laiaLsmDAFaVsi~~G~~~~~~~~~~~l~~al~FG~--fQ~~MPllG~~~G~~~------- 79 (206)
T PRK11469 15 QDVVMNITATVL------LAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGA--VETLTPLIGWGMGMLA------- 79 (206)
T ss_pred CEEEECHHHHHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------
T ss_conf 101352999999------9999999999999965104478759999999999999--9999999999999999-------
Q ss_pred HHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 74025014667776411289999999999999998511554
Q gi|254780228|r 117 LAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQN 157 (346)
Q Consensus 117 la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~ 157 (346)
++.+.+--||+... -|.+.|.||.++.-+
T Consensus 80 ---------~~~i~~~dhWiAf~---LL~~IG~~MI~e~~~ 108 (206)
T PRK11469 80 ---------SRFVLEWNHWIAFV---LLIFLGGRMIIEGFR 108 (206)
T ss_pred ---------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_conf ---------99998768999999---999999999999865
No 10
>PRK10739 putative dITP- and XTP- hydrolase; Provisional
Probab=94.52 E-value=0.32 Score=26.06 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHH
Q ss_conf 99869899999999862999999899999999999999999999999998420068998874025014667776411289
Q gi|254780228|r 57 ISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPI 136 (346)
Q Consensus 57 ~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I 136 (346)
..=-+-|+-+|....++++++.|+|......+.|. ..=.+|-+.|-.+..-+| -.-+..
T Consensus 14 iinPig~~PiFlslt~~~~~~~r~~ia~~a~~~a~-~il~~F~~~G~~il~~fg--------------------Isi~af 72 (197)
T PRK10739 14 IMDPLGNLPIFMSVLKHLEPKRRRAIMIRELLIAL-LVMLVFLFAGEKILAFLN--------------------LRAETV 72 (197)
T ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC--------------------CCHHHH
T ss_conf 97621069999998479999999999999999999-999999998999999949--------------------988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999998511554442
Q gi|254780228|r 137 SGFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 137 ~~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
..-||..|...+++|.++++++++
T Consensus 73 rIaGGilL~~ia~~Ml~~~~~~~~ 96 (197)
T PRK10739 73 SISGGIILFLIAIKMIFPSAEGNS 96 (197)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 998789999999998626665665
No 11
>TIGR00949 2A76 Homoserine/Threonine efflux protein; InterPro: IPR004778 Proteins in this group include, A chemotactic transduction protein from Pseudomonas aeruginosa. The homoserine/homoserine lactone efflux protein from Escherichia coli. and a number of hypothetical proteins.; GO: 0016021 integral to membrane.
Probab=93.57 E-value=0.49 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7641128999999999999999851
Q gi|254780228|r 129 ISQAHVPISGFGGTFLMMVSLTFFF 153 (346)
Q Consensus 129 l~~~~~~I~~~gG~fLl~~~lk~~~ 153 (346)
...-|..|++.||+||+|.|+++++
T Consensus 50 ~~~LF~~ik~~G~aYL~ylG~~~~R 74 (194)
T TIGR00949 50 SVILFTVIKYLGGAYLIYLGVKMLR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999998
No 12
>PRK10229 threonine efflux system; Provisional
Probab=89.10 E-value=1.5 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 411289999999999999998511554
Q gi|254780228|r 131 QAHVPISGFGGTFLMMVSLTFFFNSQN 157 (346)
Q Consensus 131 ~~~~~I~~~gG~fLl~~~lk~~~~~~~ 157 (346)
..+..+.+.|++||+|.|+|++++..+
T Consensus 69 ~~f~~ik~~Ga~YL~yLG~~~lr~~~~ 95 (206)
T PRK10229 69 WLHTIIMVGGGLYLCWMGYQMLRGALK 95 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999986423
No 13
>PRK11111 hypothetical protein; Provisional
Probab=88.37 E-value=1.6 Score=21.66 Aligned_cols=83 Identities=5% Similarity=-0.035 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCH
Q ss_conf 99998698999999998629999998999999999999999999999999984200689988740250146677764112
Q gi|254780228|r 55 VEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHV 134 (346)
Q Consensus 55 LE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~ 134 (346)
.=..=-+-|+-+|....+.+|+++|+|.-....+.|. ..=.+|-+.|-.+..-+| -.-+
T Consensus 18 f~iinPig~~pifl~lt~~~~~~~r~~ia~~a~~~a~-~il~~f~~~G~~iL~~fG--------------------Isl~ 76 (214)
T PRK11111 18 FALVNPVGILPVFISMTSHQTAAERNKTNLTANFSVA-IILLISLFLGDFILNLFG--------------------ISID 76 (214)
T ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC--------------------CCHH
T ss_conf 9997520069999999679999999999999999999-999999998899999969--------------------9899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999999985115544
Q gi|254780228|r 135 PISGFGGTFLMMVSLTFFFNSQNK 158 (346)
Q Consensus 135 ~I~~~gG~fLl~~~lk~~~~~~~e 158 (346)
....-||..|...+++|...+..+
T Consensus 77 afrIaGGiiL~~ial~Ml~g~~~~ 100 (214)
T PRK11111 77 SFRIAGGILVVSIAMSMISGKLGE 100 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999994999999999986486566
No 14
>pfam03596 Cad Cadmium resistance transporter.
Probab=87.83 E-value=1.1 Score=22.81 Aligned_cols=80 Identities=9% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHH
Q ss_conf 98698999999998629999998999999999999999999999999984200689988740250146677764112899
Q gi|254780228|r 58 SLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPIS 137 (346)
Q Consensus 58 sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~ 137 (346)
+-.+|+.+|.+..|++-+.+.|+|-- ++|-+.|.-.+ +.+++...++ +..-|+ .|+.
T Consensus 3 aTniDdi~vL~~fFa~~~~~~~~~~I---viGqylGf~~L---v~~Sl~~a~g-------~~~ip~----------~wil 59 (192)
T pfam03596 3 ATALDLLIILIILFAQFKQRKSHKHI---YIGQYLGSVAL---VLVSLLFAFV-------LNLVPE----------KWIL 59 (192)
T ss_pred EECHHHHHHHHHHHHHCCCCCCCEEE---EEEHHHHHHHH---HHHHHHHHHH-------HHHCCH----------HHHH
T ss_conf 31377999999999765788973388---84478779999---9999999999-------874799----------9999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999998511554442
Q gi|254780228|r 138 GFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 138 ~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
.+.|.--++.|+|...++++|++
T Consensus 60 GlLGliPi~lGi~~~~~~~~~~~ 82 (192)
T pfam03596 60 GLLGLIPIYLGIKVLIKGDDDDE 82 (192)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98758999999999972766551
No 15
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=87.68 E-value=1.8 Score=21.39 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCH
Q ss_conf 99998698999999998629999998999999999999999999999999984200689988740250146677764112
Q gi|254780228|r 55 VEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHV 134 (346)
Q Consensus 55 LE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~ 134 (346)
+=..=.+.|+-+|..+.+++|++.|+|+...-.+.|. ..=.+|-..|..+..-+| -+-+
T Consensus 15 f~i~dP~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~-~ill~f~~~G~~il~~fg--------------------Isi~ 73 (203)
T COG2095 15 FAIIDPIGNLPVFISLTKGLSPEERNRVALRASIIAL-LILLVFLLLGEGILRFFG--------------------ISID 73 (203)
T ss_pred HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC--------------------CCHH
T ss_conf 9985778503879999768999999999999999999-999999999999999968--------------------8667
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 8999999999999999851155444200
Q gi|254780228|r 135 PISGFGGTFLMMVSLTFFFNSQNKLHWI 162 (346)
Q Consensus 135 ~I~~~gG~fLl~~~lk~~~~~~~e~~w~ 162 (346)
....-||..|...+++|.+.+.++.++.
T Consensus 74 a~rIAGGilLf~ia~~ml~~~~~~~~~~ 101 (203)
T COG2095 74 AFRIAGGILLFLIALRMLFGPTSRPKKK 101 (203)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7787404989999999956876777778
No 16
>TIGR00427 TIGR00427 conserved hypothetical protein TIGR00427; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. .
Probab=86.09 E-value=2.2 Score=20.85 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHH
Q ss_conf 99869899999999862999999899999999999999999999999998420068998874025014667776411289
Q gi|254780228|r 57 ISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPI 136 (346)
Q Consensus 57 ~sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I 136 (346)
.+==+=|.=||.+.-+++|.++|+|+-.--.+-|.+ .=.+|-+.|-++..-+|- +=+..
T Consensus 20 ~~nP~G~~PiFi~LTe~y~~~~R~~i~kkA~I~~~~-IL~~f~~fG~~Il~~FGI--------------------sIdaf 78 (206)
T TIGR00427 20 IINPIGNVPIFISLTESYTAEEREKIAKKAVISAFV-ILLIFLLFGDLILKYFGI--------------------SIDAF 78 (206)
T ss_pred HHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC--------------------CHHHH
T ss_conf 854755023221148888778999998999999999-999999874578866087--------------------27898
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999999999999851155444200134445
Q gi|254780228|r 137 SGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIA 168 (346)
Q Consensus 137 ~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~ 168 (346)
..-||.+|.-.+++|...++.+..-+++-|+.
T Consensus 79 riAGGILlf~Ia~dml~gK~~~~~~~k~~E~~ 110 (206)
T TIGR00427 79 RIAGGILLFLIALDMLSGKESEKKKHKHDEKE 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHH
T ss_conf 99889999999999984025504520413478
No 17
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=81.62 E-value=3.4 Score=19.69 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4112899999999999999985115544
Q gi|254780228|r 131 QAHVPISGFGGTFLMMVSLTFFFNSQNK 158 (346)
Q Consensus 131 ~~~~~I~~~gG~fLl~~~lk~~~~~~~e 158 (346)
..+..+.++|++||+|.|+|.++.+.++
T Consensus 70 ~~f~~lk~~Ga~YLi~Lg~~~~r~~~~~ 97 (205)
T PRK10520 70 LAFEVLKWAGAAYLIWLGIQQWRAAGAI 97 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999998525667
No 18
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=79.12 E-value=4.1 Score=19.17 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999986989999999986299999989999999-999999999999999999842006899887402501466777641
Q gi|254780228|r 54 VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGI-LIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQA 132 (346)
Q Consensus 54 vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GI-lgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~ 132 (346)
++=.+-++|-+++.+..|++.+.+-|++-.+-|= +|-+ -++...+..+..-.+- |+
T Consensus 10 vly~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~---~lilaSL~~a~v~~fv-----------p~--------- 66 (205)
T COG4300 10 VLYIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSV---ILILASLLFAFVLNFV-----------PE--------- 66 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH---HHHHHHHHHHHHHHHC-----------CH---------
T ss_conf 999996377999999999973246747988678788689---9999999999999618-----------49---------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1289999999999999998511554442
Q gi|254780228|r 133 HVPISGFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 133 ~~~I~~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
.||....|..=++.|+|....+|+|.+
T Consensus 67 -e~I~glLGLIPi~LGik~l~~~d~d~e 93 (205)
T COG4300 67 -EWILGLLGLIPIYLGIKVLILGDDDGE 93 (205)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf -899888758789984687502667674
No 19
>PRK10807 paraquat-inducible protein B; Provisional
Probab=68.15 E-value=1.9 Score=21.30 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 9875115779987669999999--999999998763
Q gi|254780228|r 1 MKSNSLYASLIHHFRWAILVTV--AGFLCGLGIGWQ 34 (346)
Q Consensus 1 ~~~~~~~~~~~~~f~ws~~~~~--lal~f~~~i~~~ 34 (346)
|.+|..+|-+.|-=+||.+|+. +|++.|+|+.|+
T Consensus 1 ~~~~~~~A~i~~~~~~S~iWlvPivA~~ig~wl~~~ 36 (546)
T PRK10807 1 MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWILFY 36 (546)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 997777625764487785899999999999999999
No 20
>PRK10323 neutral amino-acid efflux protein; Provisional
Probab=64.29 E-value=9.1 Score=17.03 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=25.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7641128999999999999999851155444
Q gi|254780228|r 129 ISQAHVPISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 129 l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
.-..++.+...|++||+|.++|..+++.+++
T Consensus 68 ~P~~~~~lk~~Ga~YLlyLA~ki~~s~~~~~ 98 (195)
T PRK10323 68 DPAAVHLLSWAGAAYIVWLAWKIATSPTKED 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8899999999999999999999971987655
No 21
>pfam01810 LysE LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.
Probab=62.95 E-value=9.7 Score=16.88 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4112899999999999999985115544
Q gi|254780228|r 131 QAHVPISGFGGTFLMMVSLTFFFNSQNK 158 (346)
Q Consensus 131 ~~~~~I~~~gG~fLl~~~lk~~~~~~~e 158 (346)
..+..+...|++||+|.|++.++++.++
T Consensus 57 ~~~~~l~~~G~~yL~ylg~~~~~~~~~~ 84 (191)
T pfam01810 57 ILFTVLKLGGGAYLLYLGILTLRAAWSP 84 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999999999824565
No 22
>COG2119 Predicted membrane protein [Function unknown]
Probab=60.70 E-value=11 Score=16.63 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 89999999986299999989999999999999999999999999842006899887402501466777641128999999
Q gi|254780228|r 62 ENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGG 141 (346)
Q Consensus 62 DNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG 141 (346)
|.-+..++++. -+||++.-+-|+.+|.+.|-..=..+|.+....+. ++ +.....|
T Consensus 18 DKT~lia~llA---~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~------------~~----------~~~~~~~ 72 (190)
T COG2119 18 DKTQLIAMLLA---MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLP------------ER----------PLAWASG 72 (190)
T ss_pred CHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------HH----------HHHHHHH
T ss_conf 28999999999---76688003799999999999999999888751484------------45----------7999999
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999985115544
Q gi|254780228|r 142 TFLMMVSLTFFFNSQNK 158 (346)
Q Consensus 142 ~fLl~~~lk~~~~~~~e 158 (346)
.--+-.++++..++.++
T Consensus 73 ~~Flafav~~l~edk~~ 89 (190)
T COG2119 73 VLFLAFAVWMLIEDKED 89 (190)
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999980662213
No 23
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=8.3 Score=17.28 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76411289999999999999998511554442
Q gi|254780228|r 129 ISQAHVPISGFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 129 l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
+.+-.-.+-.+-|++.++...|.+.+++++.|
T Consensus 42 lsri~YiivGlagv~~il~l~k~~~~~~~~~~ 73 (79)
T COG2155 42 LTRIIYIIVGLAGVYQILPLFKVCEKKSRDAH 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCC
T ss_conf 99999999999999999974345300102114
No 24
>COG1971 Predicted membrane protein [Function unknown]
Probab=54.75 E-value=13 Score=16.01 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999986989999-999986299999989999999999999999999999999842006899887402501466777641
Q gi|254780228|r 54 VVEISLSFENAIL-NAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQA 132 (346)
Q Consensus 54 vLE~sLSvDNafV-~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~ 132 (346)
++-.++|.||--| ...=.+...++. +..|..++...+ .-.+.|.+|-....-++.+ +.
T Consensus 8 llA~alsmDAFav~l~~G~~~~k~~~-~~~L~ia~~fG~--f~~i~pliG~~~g~~~s~~----------------i~-- 66 (190)
T COG1971 8 LLAIALSMDAFAVSLGKGLAKHKIRF-KEALVIALIFGV--FQAIMPLIGWFIGKFLSTF----------------IA-- 66 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----------------HH--
T ss_conf 99999721699999983156425108-999999999999--9999999999999999999----------------99--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 12899999999999999985115544
Q gi|254780228|r 133 HVPISGFGGTFLMMVSLTFFFNSQNK 158 (346)
Q Consensus 133 ~~~I~~~gG~fLl~~~lk~~~~~~~e 158 (346)
.|=..++++-|...|.+|..+.-++
T Consensus 67 -~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 67 -EWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf -9999999999999999999998035
No 25
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=48.38 E-value=17 Score=15.38 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7641128999999999999999851155444
Q gi|254780228|r 129 ISQAHVPISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 129 l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
....+..+.+.|++||+|.++++++++.++.
T Consensus 68 ~~~~f~~lk~~GaaYL~ylg~~~lra~~~~~ 98 (208)
T COG1280 68 SPALFTVLKLAGAAYLLYLGWKALRAGGAAL 98 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 2999999999999999999999985766455
No 26
>pfam02158 Neuregulin Neuregulin family.
Probab=46.76 E-value=8.6 Score=17.19 Aligned_cols=17 Identities=53% Similarity=0.819 Sum_probs=13.7
Q ss_pred HHHHHHHHHH-HHHHHHH
Q ss_conf 9999899999-9999999
Q gi|254780228|r 76 SIWQKRFLTW-GILIAVF 92 (346)
Q Consensus 76 ~~~q~rvL~~-GIlgAvf 92 (346)
+-||||||+. ||-+|+.
T Consensus 3 ELYQKRVLTITGICvALL 20 (406)
T pfam02158 3 ELYQKRVLTITGICIALL 20 (406)
T ss_pred HHHHHHEHHHHHHHHHHH
T ss_conf 443410211313528876
No 27
>pfam11947 DUF3464 Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.28 E-value=22 Score=14.61 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=13.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 422028825899999999999999
Q gi|254780228|r 317 QTIVDIPEIFTGTSSTILIFLSIY 340 (346)
Q Consensus 317 ~~~~~iPe~~s~~i~~~~i~~~i~ 340 (346)
...+++|.|+++++..++++.+++
T Consensus 85 ~~~~d~p~~~~~~~s~~~Fg~gll 108 (149)
T pfam11947 85 RGIIDVPPWVTLLVSLGFFGLGLL 108 (149)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHH
T ss_conf 443644706999999999999886
No 28
>pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=37.12 E-value=25 Score=14.30 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8825899999999999
Q gi|254780228|r 322 IPEIFTGTSSTILIFL 337 (346)
Q Consensus 322 iPe~~s~~i~~~~i~~ 337 (346)
.|.|+-..++++.++.
T Consensus 178 Lp~~v~iiigaia~~~ 193 (206)
T pfam06570 178 LPPWVYIIIGAIAFGV 193 (206)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8669999999999999
No 29
>TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export..
Probab=33.75 E-value=26 Score=14.17 Aligned_cols=81 Identities=9% Similarity=0.185 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHH
Q ss_conf 98698999999998629999998999999999999999999999999984200689988740250146677764112899
Q gi|254780228|r 58 SLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPIS 137 (346)
Q Consensus 58 sLSvDNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~ 137 (346)
|-.+|-+++....|++-..|-|.|=.. +|-+.|.-+ +..+++...++ +.-.-|+. |+.
T Consensus 3 atg~d~LVILl~~f~~~Kt~~~~kdI~---iGQYlG~~i---li~vSLl~afg------v~nliPek----------Wvl 60 (196)
T TIGR00779 3 ATGVDLLVILLILFARAKTRKEVKDIY---IGQYLGSII---LILVSLLLAFG------VVNLIPEK----------WVL 60 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEE---EEHHHHHHH---HHHHHHHHHHH------HHHHCCCH----------HHH
T ss_conf 058999999999974220268733268---833688999---99999999888------87506414----------767
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999998511554442
Q gi|254780228|r 138 GFGGTFLMMVSLTFFFNSQNKLH 160 (346)
Q Consensus 138 ~~gG~fLl~~~lk~~~~~~~e~~ 160 (346)
.+=|..=+|.|+|.+-.+|+|+|
T Consensus 61 GLLGLiPiYLGik~~Ikge~ded 83 (196)
T TIGR00779 61 GLLGLIPIYLGIKVFIKGEEDED 83 (196)
T ss_pred HHHHHHHHHHCEEEEEECCCCCH
T ss_conf 77645347423176774587613
No 30
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=31.18 E-value=16 Score=15.59 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC
Q ss_conf 7511577998766999999--99999999987633
Q gi|254780228|r 3 SNSLYASLIHHFRWAILVT--VAGFLCGLGIGWQF 35 (346)
Q Consensus 3 ~~~~~~~~~~~f~ws~~~~--~lal~f~~~i~~~~ 35 (346)
.+...+-+++-=+||.+|+ .+|++.|+|++|..
T Consensus 7 ~~~~~a~ir~~r~~SpiWllPivAl~igawL~~~~ 41 (553)
T COG3008 7 PSNGPAQIRKKRRISPIWLLPIVALLIGAWLLFQH 41 (553)
T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99887330320577806899999999999999999
No 31
>pfam00599 Flu_M2 Influenza Matrix protein (M2). This protein spans the viral membrane with an extracellular amino-terminus external and a cytoplasmic carboxy-terminus.
Probab=30.33 E-value=32 Score=13.61 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 320999999999999999
Q gi|254780228|r 263 TKNFFIIVIGLTIGAIYV 280 (346)
Q Consensus 263 T~dpfIV~~g~~~gilgl 280 (346)
|+||. +..++++||+-|
T Consensus 22 ssdpl-v~aa~iigilhl 38 (97)
T pfam00599 22 SSDLL-VAAASIIGILHL 38 (97)
T ss_pred CCCCH-HHHHHHHHHHHH
T ss_conf 88608-899999999999
No 32
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=30.05 E-value=31 Score=13.73 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8825899999999999999974239
Q gi|254780228|r 322 IPEIFTGTSSTILIFLSIYSSIKNK 346 (346)
Q Consensus 322 iPe~~s~~i~~~~i~~~i~~Si~~k 346 (346)
|||-+ +.|+.+.+.++++..-|.|
T Consensus 281 IPEGL-PIiVTVTLALGVLRM~kkr 304 (856)
T TIGR01522 281 IPEGL-PIIVTVTLALGVLRMSKKR 304 (856)
T ss_pred CCCCC-CEEEEHHHHHHHHHHHCCC
T ss_conf 14879-6233020355467652110
No 33
>PRK11098 transport protein; Reviewed
Probab=28.41 E-value=35 Score=13.40 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHC-----CHHHH
Q ss_conf 987669999999999999998763365302467789999999999999869899------9999998629-----99999
Q gi|254780228|r 11 IHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENA------ILNAKNLQKM-----SSIWQ 79 (346)
Q Consensus 11 ~~~f~ws~~~~~lal~f~~~i~~~~g~~~~~~~~a~~i~~~L~vLE~sLSvDNa------fV~a~If~~f-----p~~~q 79 (346)
+-.|--.++|+.+++++-+..+-..|..........-... -+|+-.|-|++ .+-+.+|..+ |++||
T Consensus 10 ~~ff~s~~~W~~~~i~~wy~~g~~~~~~l~~~~~~~~~pi---~~~~f~~~~flwfy~y~~~~~~~F~~~w~~~~~~~W~ 86 (408)
T PRK11098 10 KLFFLSAFVWALIAVIFWYAGGGDWLARLTGLAASDQLPI---SAARFWSLDFLWFYAYYLVCVGLFAGFWFIYSPHRWQ 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 0899999999999999999858778752387776556872---0003216369999999999999999999972699858
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCC-HHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999999----984200-689988740250146677764112899999999999999
Q gi|254780228|r 80 KRFLTWGILIAVFGMRIIFPIMIVC----IVSTIN-PIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSL 149 (346)
Q Consensus 80 ~rvL~~GIlgAvf~mR~iF~~liv~----~~~~~~-~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~l 149 (346)
.|-|+|-.+.+-. ....|. +-++.| +.+.++-|+..|+.+. ..+....+..|++...+++.+
T Consensus 87 ----~Wsi~Gs~~il~~--~~~~Vqv~V~in~W~~~Fyd~iq~al~~~~~~~--~~~f~~~l~~f~~ia~~~i~i 153 (408)
T PRK11098 87 ----YWSILGTALIIFV--TWFLVQVSVAVNAWYAPFYDLIQTALSSPHKVT--IEQFYSEVGVFLGIALIAVTI 153 (408)
T ss_pred ----HHHHHHHHHHHHH--HHHHHEEEEEEEHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf ----8899999999999--998850368864100168999999864899875--999999999999999999999
No 34
>KOG2762 consensus
Probab=27.67 E-value=28 Score=14.02 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41113455213-209999999999999999999999
Q gi|254780228|r 253 LDGVISSFAIT-KNFFIIVIGLTIGAIYVRSMTLLM 287 (346)
Q Consensus 253 ~DSVpAafAIT-~dpfIV~~g~~~gilglRslt~yF 287 (346)
..-+|+.=+.| +-++..++||.+||++=||+---|
T Consensus 311 k~~~~~~~~~t~~~~~~l~tsNlIGI~fsRSLHYQF 346 (429)
T KOG2762 311 KRPLPALPAATPQIVFTLFTSNLIGILFSRSLHYQF 346 (429)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 199997757642033898860415311001567889
No 35
>KOG2881 consensus
Probab=27.09 E-value=37 Score=13.26 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=48.2
Q ss_pred HHHHHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
Q ss_conf 999869-------8999999998629999998999999999999999999999999984200689988740250146677
Q gi|254780228|r 56 EISLSF-------ENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKI 128 (346)
Q Consensus 56 E~sLSv-------DNafV~a~If~~fp~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~ 128 (346)
-.|.|+ |.-|..|.+++. +|-++--+-|=+.|++.|-..-..+|-..-+.+ |..|..
T Consensus 70 ~~SiSmI~vsEiGDKTFfiAAlmAm---r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~li------------pr~~T~- 133 (294)
T KOG2881 70 TASISMIFVSEIGDKTFFIAALMAM---RYPRLTVFSGAMSALALMTILSVLLGWAAPNLI------------PRKYTY- 133 (294)
T ss_pred HHHHHHEEEECCCCHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------HHHHHH-
T ss_conf 8876511452015238999999986---443066887789999999999999877522201------------289999-
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7641128999999999999999851155444
Q gi|254780228|r 129 ISQAHVPISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 129 l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
..--.+..+||.-++|-+.++--++++|+
T Consensus 134 --~~~t~LF~iFGlkmL~eg~~~~~~~~~eE 162 (294)
T KOG2881 134 --YLATALFLIFGLKMLKEGWEMSPSEGQEE 162 (294)
T ss_pred --HHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf --99999999998999987751797512447
No 36
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=25.70 E-value=16 Score=15.59 Aligned_cols=29 Identities=38% Similarity=0.484 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999987998610024789
Q gi|254780228|r 275 IGAIYVRSMTLLMLKQGILNKYKYLEHGS 303 (346)
Q Consensus 275 ~gilglRslt~yFv~~g~l~~f~yLe~ga 303 (346)
+|+.+||-||=|.=.+.+=++=++|.|+.
T Consensus 297 IGAVaMRlLTK~Mn~Ee~eE~~V~LPh~i 325 (332)
T TIGR01481 297 IGAVAMRLLTKLMNDEEVEEKTVVLPHGI 325 (332)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEECCCEE
T ss_conf 67999986543056440147704537311
No 37
>KOG2297 consensus
Probab=23.21 E-value=44 Score=12.81 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=3.7
Q ss_pred HHCCHHHHHH
Q ss_conf 6299999989
Q gi|254780228|r 72 QKMSSIWQKR 81 (346)
Q Consensus 72 ~~fp~~~q~r 81 (346)
+-|++.-|++
T Consensus 140 k~F~e~Er~K 149 (412)
T KOG2297 140 KLFEENERKK 149 (412)
T ss_pred HCCCHHHHHH
T ss_conf 7048777899
No 38
>pfam08122 NDUF_B12 NADH-ubiquinone oxidoreductase B12 subunit family. This family consists of the NADH-ubiquinone oxidoreductase B12 subunit proteins. NADH is the central source of electrons in the mitochondrial and bacterial respiration. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. The function of this subunit is unclear.
Probab=22.32 E-value=45 Score=12.70 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999999999999999851155444
Q gi|254780228|r 135 PISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 135 ~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
-...-+++|.++.++.+++++.++.
T Consensus 30 Gf~~g~~AFvv~~~~E~~l~~~~~~ 54 (57)
T pfam08122 30 GFGWGFAAFVVAVAIEYFLKSSHHG 54 (57)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4269999999999999995475567
Done!