Query         gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs    131 out of 603
Neff          5.8 
Searched_HMMs 13730
Date          Mon May 23 22:41:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780228.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kf6d_ f.21.2.2 (D:) Fumarate   5.7      60  0.0044    9.1   4.9   72   75-155     5-80  (119)
  2 d2e74e1 f.23.24.1 (E:1-32) Pet   4.4      83   0.006    8.2   3.2   14   87-102     2-15  (32)
  3 d1be3k_ f.23.15.1 (K:) Subunit   4.1      90  0.0066    8.0   2.7   14   78-91      3-16  (26)
  4 d1nmra_ a.144.1.1 (A:) poly(A)   3.9      97   0.007    7.8   1.6   17   67-83     11-27  (85)
  5 d2oara1 f.16.1.1 (A:10-118) Ga   3.6 1.1E+02  0.0077    7.6   4.4   17  143-159    79-95  (109)
  6 d1r89a1 a.160.1.3 (A:143-257)    3.5 1.1E+02   0.008    7.5   0.9   15   35-49     19-33  (115)
  7 d2bgwa1 a.60.2.5 (A:160-229) D   3.1 1.3E+02  0.0093    7.1   0.4   10  250-259    12-21  (70)
  8 d2dsya1 d.304.1.2 (A:3-82) Hyp   3.0 1.3E+02  0.0092    7.1  -0.1   18  279-298     1-18  (80)
  9 d3bl2a1 f.1.4.1 (A:6-134) Bcl-   2.6 1.6E+02   0.011    6.5   0.5   15  283-297   114-128 (129)
 10 d1o8ra_ d.234.1.1 (A:) Proguan   2.6      83   0.006    8.2  -1.5    9  248-256     7-15  (94)

No 1  
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.67  E-value=60  Score=9.11  Aligned_cols=72  Identities=21%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             999998999999999999999999--9999--999842006899887402501466777641128999999999999999
Q gi|254780228|r   75 SSIWQKRFLTWGILIAVFGMRIIF--PIMI--VCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLT  150 (346)
Q Consensus        75 p~~~q~rvL~~GIlgAvf~mR~iF--~~li--v~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk  150 (346)
                      .||..+.-.+||..||= ||-.-+  |.++  +.+...+|..      =.+...|++.+.=++.|+-..+  -+.++.+-
T Consensus         5 ~pKRS~EPi~WgLFgAG-Gm~~A~~~Pvlill~giLlPlG~~------~~~a~~y~~i~aFa~s~iG~l~--ll~~i~lp   75 (119)
T d1kf6d_           5 NPKRSDEPVFWGLFGAG-GMWSAIIAPVMILLVGILLPLGLF------PGDALSYERVLAFAQSFIGRVF--LFLMIVLP   75 (119)
T ss_dssp             SCCCCSHHHHHHHHHHH-HHHHHHTHHHHHHHHHTTGGGTCS------STTTTSHHHHHHHHTSHHHHHH--HHHHHHHH
T ss_pred             CCCCCCCCCHHEEECCC-CHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_conf             98877898311234477-205899988999999999961267------8665689999999844799999--99999999


Q ss_pred             HHHCC
Q ss_conf             85115
Q gi|254780228|r  151 FFFNS  155 (346)
Q Consensus       151 ~~~~~  155 (346)
                      ++..-
T Consensus        76 lWh~~   80 (119)
T d1kf6d_          76 LWCGL   80 (119)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 2  
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.39  E-value=83  Score=8.24  Aligned_cols=14  Identities=43%  Similarity=0.562  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780228|r   87 ILIAVFGMRIIFPIMI  102 (346)
Q Consensus        87 IlgAvf~mR~iF~~li  102 (346)
                      |+||+  +-.+|+.+.
T Consensus         2 ilgav--fyivfialf   15 (32)
T d2e74e1           2 ILGAV--FYIVFIALF   15 (32)
T ss_dssp             HHHHH--HHHHHHHHH
T ss_pred             EEEEE--HHHHHHHHH
T ss_conf             33300--799999999


No 3  
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.09  E-value=90  Score=8.01  Aligned_cols=14  Identities=36%  Similarity=0.710  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99899999999999
Q gi|254780228|r   78 WQKRFLTWGILIAV   91 (346)
Q Consensus        78 ~q~rvL~~GIlgAv   91 (346)
                      |-...-.||-.||+
T Consensus         3 wvptaqlwgavgav   16 (26)
T d1be3k_           3 WVPTAQLWGAVGAV   16 (26)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCE
T ss_conf             54078987650412


No 4  
>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=3.87  E-value=97  Score=7.83  Aligned_cols=17  Identities=24%  Similarity=0.202  Sum_probs=11.0

Q ss_pred             HHHHHHHCCHHHHHHHH
Q ss_conf             99998629999998999
Q gi|254780228|r   67 NAKNLQKMSSIWQKRFL   83 (346)
Q Consensus        67 ~a~If~~fp~~~q~rvL   83 (346)
                      .+..+.+.||..||+.|
T Consensus        11 ~a~~la~~~p~eqK~~L   27 (85)
T d1nmra_          11 LSTVLANLTPEQQKNVL   27 (85)
T ss_dssp             THHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHH
T ss_conf             89988609989999998


No 5  
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.60  E-value=1.1e+02  Score=7.59  Aligned_cols=17  Identities=12%  Similarity=0.194  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             99999999851155444
Q gi|254780228|r  143 FLMMVSLTFFFNSQNKL  159 (346)
Q Consensus       143 fLl~~~lk~~~~~~~e~  159 (346)
                      |++-...+-+.++++++
T Consensus        79 F~vvk~~n~~~~k~~~~   95 (109)
T d2oara1          79 FLVVLPYNTLRKKGEVE   95 (109)
T ss_dssp             HHTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             99999999874057899


No 6  
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.49  E-value=1.1e+02  Score=7.48  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=6.4

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             365302467789999
Q gi|254780228|r   35 FTHTLSGTISTVYIC   49 (346)
Q Consensus        35 ~g~~~~~~~~a~~i~   49 (346)
                      +|++...+-++||++
T Consensus        19 YGaE~~~~GFSGYl~   33 (115)
T d1r89a1          19 YGAEYKVRGFSGYLC   33 (115)
T ss_dssp             BCCSTTTCCBCHHHH
T ss_pred             CCHHHHCCCCHHHHH
T ss_conf             436765176216999


No 7  
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=3.08  E-value=1.3e+02  Score=7.07  Aligned_cols=10  Identities=10%  Similarity=-0.080  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             8754111345
Q gi|254780228|r  250 SLSLDGVISS  259 (346)
Q Consensus       250 ~FA~DSVpAa  259 (346)
                      .|.++|||++
T Consensus        12 ~~~L~~IpgI   21 (70)
T d2bgwa1          12 LYILQSFPGI   21 (70)
T ss_dssp             HHHHHTSTTC
T ss_pred             HHHHCCCCCC
T ss_conf             9998089995


No 8  
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=2.96  E-value=1.3e+02  Score=7.10  Aligned_cols=18  Identities=11%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999879986100
Q gi|254780228|r  279 YVRSMTLLMLKQGILNKYKY  298 (346)
Q Consensus       279 glRslt~yFv~~g~l~~f~y  298 (346)
                      |+++|+-|.-+  .|++..|
T Consensus         1 ~~~~l~~y~~~--~M~~~~Y   18 (80)
T d2dsya1           1 GMGTLTRYLEE--AMARARY   18 (80)
T ss_dssp             CCSHHHHHHHH--HHHTCEE
T ss_pred             CCCHHHHHHHH--HHHHCEE
T ss_conf             95179999999--8735526


No 9  
>d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=2.60  E-value=1.6e+02  Score=6.52  Aligned_cols=15  Identities=20%  Similarity=0.625  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999987998610
Q gi|254780228|r  283 MTLLMLKQGILNKYK  297 (346)
Q Consensus       283 lt~yFv~~g~l~~f~  297 (346)
                      ||-+|++..+++.||
T Consensus       114 mthffiennlmnhfp  128 (129)
T d3bl2a1         114 MTHFFIENNLMNHFP  128 (129)
T ss_dssp             HHHHHHHTTGGGGCC
T ss_pred             HHHHHHHHCHHHCCC
T ss_conf             998988713231279


No 10 
>d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.57  E-value=83  Score=8.25  Aligned_cols=9  Identities=44%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             878754111
Q gi|254780228|r  248 DASLSLDGV  256 (346)
Q Consensus       248 D~~FA~DSV  256 (346)
                      |.+|+++||
T Consensus         7 ~fsf~LESV   15 (94)
T d1o8ra_           7 NFSFSLESV   15 (94)
T ss_dssp             SSEECSHHH
T ss_pred             CEEEEHHHH
T ss_conf             898628999


Done!