Query gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 346 No_of_seqs 131 out of 603 Neff 5.8 Searched_HMMs 13730 Date Mon May 23 22:41:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780228.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1kf6d_ f.21.2.2 (D:) Fumarate 5.7 60 0.0044 9.1 4.9 72 75-155 5-80 (119) 2 d2e74e1 f.23.24.1 (E:1-32) Pet 4.4 83 0.006 8.2 3.2 14 87-102 2-15 (32) 3 d1be3k_ f.23.15.1 (K:) Subunit 4.1 90 0.0066 8.0 2.7 14 78-91 3-16 (26) 4 d1nmra_ a.144.1.1 (A:) poly(A) 3.9 97 0.007 7.8 1.6 17 67-83 11-27 (85) 5 d2oara1 f.16.1.1 (A:10-118) Ga 3.6 1.1E+02 0.0077 7.6 4.4 17 143-159 79-95 (109) 6 d1r89a1 a.160.1.3 (A:143-257) 3.5 1.1E+02 0.008 7.5 0.9 15 35-49 19-33 (115) 7 d2bgwa1 a.60.2.5 (A:160-229) D 3.1 1.3E+02 0.0093 7.1 0.4 10 250-259 12-21 (70) 8 d2dsya1 d.304.1.2 (A:3-82) Hyp 3.0 1.3E+02 0.0092 7.1 -0.1 18 279-298 1-18 (80) 9 d3bl2a1 f.1.4.1 (A:6-134) Bcl- 2.6 1.6E+02 0.011 6.5 0.5 15 283-297 114-128 (129) 10 d1o8ra_ d.234.1.1 (A:) Proguan 2.6 83 0.006 8.2 -1.5 9 248-256 7-15 (94) No 1 >d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]} Probab=5.67 E-value=60 Score=9.11 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=37.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH Q ss_conf 999998999999999999999999--9999--999842006899887402501466777641128999999999999999 Q gi|254780228|r 75 SSIWQKRFLTWGILIAVFGMRIIF--PIMI--VCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLT 150 (346) Q Consensus 75 p~~~q~rvL~~GIlgAvf~mR~iF--~~li--v~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk 150 (346) .||..+.-.+||..||= ||-.-+ |.++ +.+...+|.. =.+...|++.+.=++.|+-..+ -+.++.+- T Consensus 5 ~pKRS~EPi~WgLFgAG-Gm~~A~~~Pvlill~giLlPlG~~------~~~a~~y~~i~aFa~s~iG~l~--ll~~i~lp 75 (119) T d1kf6d_ 5 NPKRSDEPVFWGLFGAG-GMWSAIIAPVMILLVGILLPLGLF------PGDALSYERVLAFAQSFIGRVF--LFLMIVLP 75 (119) T ss_dssp SCCCCSHHHHHHHHHHH-HHHHHHTHHHHHHHHHTTGGGTCS------STTTTSHHHHHHHHTSHHHHHH--HHHHHHHH T ss_pred CCCCCCCCCHHEEECCC-CHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHHH--HHHHHHHH T ss_conf 98877898311234477-205899988999999999961267------8665689999999844799999--99999999 Q ss_pred HHHCC Q ss_conf 85115 Q gi|254780228|r 151 FFFNS 155 (346) Q Consensus 151 ~~~~~ 155 (346) ++..- T Consensus 76 lWh~~ 80 (119) T d1kf6d_ 76 LWCGL 80 (119) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 2 >d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=4.39 E-value=83 Score=8.24 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999999 Q gi|254780228|r 87 ILIAVFGMRIIFPIMI 102 (346) Q Consensus 87 IlgAvf~mR~iF~~li 102 (346) |+||+ +-.+|+.+. T Consensus 2 ilgav--fyivfialf 15 (32) T d2e74e1 2 ILGAV--FYIVFIALF 15 (32) T ss_dssp HHHHH--HHHHHHHHH T ss_pred EEEEE--HHHHHHHHH T ss_conf 33300--799999999 No 3 >d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Probab=4.09 E-value=90 Score=8.01 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99899999999999 Q gi|254780228|r 78 WQKRFLTWGILIAV 91 (346) Q Consensus 78 ~q~rvL~~GIlgAv 91 (346) |-...-.||-.||+ T Consensus 3 wvptaqlwgavgav 16 (26) T d1be3k_ 3 WVPTAQLWGAVGAV 16 (26) T ss_dssp HHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCE T ss_conf 54078987650412 No 4 >d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan (Trypanosoma cruzi) [TaxId: 5693]} Probab=3.87 E-value=97 Score=7.83 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=11.0 Q ss_pred HHHHHHHCCHHHHHHHH Q ss_conf 99998629999998999 Q gi|254780228|r 67 NAKNLQKMSSIWQKRFL 83 (346) Q Consensus 67 ~a~If~~fp~~~q~rvL 83 (346) .+..+.+.||..||+.| T Consensus 11 ~a~~la~~~p~eqK~~L 27 (85) T d1nmra_ 11 LSTVLANLTPEQQKNVL 27 (85) T ss_dssp THHHHTTCHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHH T ss_conf 89988609989999998 No 5 >d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]} Probab=3.60 E-value=1.1e+02 Score=7.59 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 99999999851155444 Q gi|254780228|r 143 FLMMVSLTFFFNSQNKL 159 (346) Q Consensus 143 fLl~~~lk~~~~~~~e~ 159 (346) |++-...+-+.++++++ T Consensus 79 F~vvk~~n~~~~k~~~~ 95 (109) T d2oara1 79 FLVVLPYNTLRKKGEVE 95 (109) T ss_dssp HHTHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 99999999874057899 No 6 >d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=3.49 E-value=1.1e+02 Score=7.48 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=6.4 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 365302467789999 Q gi|254780228|r 35 FTHTLSGTISTVYIC 49 (346) Q Consensus 35 ~g~~~~~~~~a~~i~ 49 (346) +|++...+-++||++ T Consensus 19 YGaE~~~~GFSGYl~ 33 (115) T d1r89a1 19 YGAEYKVRGFSGYLC 33 (115) T ss_dssp BCCSTTTCCBCHHHH T ss_pred CCHHHHCCCCHHHHH T ss_conf 436765176216999 No 7 >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Probab=3.08 E-value=1.3e+02 Score=7.07 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=0.0 Q ss_pred HHHHHHHHHH Q ss_conf 8754111345 Q gi|254780228|r 250 SLSLDGVISS 259 (346) Q Consensus 250 ~FA~DSVpAa 259 (346) .|.++|||++ T Consensus 12 ~~~L~~IpgI 21 (70) T d2bgwa1 12 LYILQSFPGI 21 (70) T ss_dssp HHHHHTSTTC T ss_pred HHHHCCCCCC T ss_conf 9998089995 No 8 >d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]} Probab=2.96 E-value=1.3e+02 Score=7.10 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999879986100 Q gi|254780228|r 279 YVRSMTLLMLKQGILNKYKY 298 (346) Q Consensus 279 glRslt~yFv~~g~l~~f~y 298 (346) |+++|+-|.-+ .|++..| T Consensus 1 ~~~~l~~y~~~--~M~~~~Y 18 (80) T d2dsya1 1 GMGTLTRYLEE--AMARARY 18 (80) T ss_dssp CCSHHHHHHHH--HHHTCEE T ss_pred CCCHHHHHHHH--HHHHCEE T ss_conf 95179999999--8735526 No 9 >d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid herpesvirus 4 [TaxId: 33708]} Probab=2.60 E-value=1.6e+02 Score=6.52 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999987998610 Q gi|254780228|r 283 MTLLMLKQGILNKYK 297 (346) Q Consensus 283 lt~yFv~~g~l~~f~ 297 (346) ||-+|++..+++.|| T Consensus 114 mthffiennlmnhfp 128 (129) T d3bl2a1 114 MTHFFIENNLMNHFP 128 (129) T ss_dssp HHHHHHHTTGGGGCC T ss_pred HHHHHHHHCHHHCCC T ss_conf 998988713231279 No 10 >d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.57 E-value=83 Score=8.25 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 878754111 Q gi|254780228|r 248 DASLSLDGV 256 (346) Q Consensus 248 D~~FA~DSV 256 (346) |.+|+++|| T Consensus 7 ~fsf~LESV 15 (94) T d1o8ra_ 7 NFSFSLESV 15 (94) T ss_dssp SSEECSHHH T ss_pred CEEEEHHHH T ss_conf 898628999 Done!