RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780228|ref|YP_003064641.1| hypothetical protein
CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
(346 letters)
>gnl|CDD|32724 COG2899, COG2899, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 346
Score = 301 bits (773), Expect = 2e-82
Identities = 139/333 (41%), Positives = 225/333 (67%), Gaps = 5/333 (1%)
Query: 14 FRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQK 73
F W+ +VTV +G+++ T+ + ++IC +LAV+EISLSF+NAI+NA L+
Sbjct: 7 FGWSFIVTVIALALAAWLGYEYGGTM---WTALFICAVLAVLEISLSFDNAIVNAAILKD 63
Query: 74 MSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133
MS WQKRFLTWGILIAVFGMR++FP++IV + + ++PI AM LA+ P+ Y KII+ AH
Sbjct: 64 MSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAH 123
Query: 134 VPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNI 193
I+ FGGTFL+MV L FFF+ + +HW+ ++E ++ + ++ G+++ + ++++ S +
Sbjct: 124 PQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERPLARIGRLGGVEVIVAIALLLLFSRL 183
Query: 194 LP-TNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDASLS 252
L + + + + + ++ + ++ + +L + GK GL FLYLE++DAS S
Sbjct: 184 LTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFS 243
Query: 253 LDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSV 312
DGVI +FAIT + II +GL IGA++VRS+T+ ++++G L++Y YLEHG++Y+I L+V
Sbjct: 244 FDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAV 303
Query: 313 IMFLQT-IVDIPEIFTGTSSTILIFLSIYSSIK 344
IM L T IPE+ TG + I LS++SS++
Sbjct: 304 IMLLSTDRFHIPEVVTGLVGAVFIGLSLWSSVR 336
>gnl|CDD|113115 pfam04332, DUF475, Protein of unknown function (DUF475). Predicted
to be an integral membrane protein with multiple
membrane spans.
Length = 294
Score = 247 bits (632), Expect = 4e-66
Identities = 118/289 (40%), Positives = 186/289 (64%), Gaps = 7/289 (2%)
Query: 61 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120
F+NA++NA L++MS WQK FLT GILIAVFGMR+IFP++IV + + ++PIEAM LA+
Sbjct: 1 FDNAVVNASILKRMSPFWQKMFLTIGILIAVFGMRLIFPLVIVAVSAGLDPIEAMKLALE 60
Query: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180
+P Y ++++ AH I+ FGG FL+MV L FFF+ + + W+ ++E ++ + K+ I
Sbjct: 61 NPDRYEELLTAAHPSIAAFGGMFLLMVFLDFFFDDR-DIKWLKWIERPLARIGKLDAISA 119
Query: 181 FIVLSIIFGISNIL--PTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTH---GK 235
IV ++ + P + + + + ++ + ++ + D S GK
Sbjct: 120 IIVFVLLLIFAFFFTAPAEQFQTVLFAGLLGLLTYLLVDGFGRLFEPDGSPTGAVRAAGK 179
Query: 236 HGLNLFLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNK 295
GL LFLYLE++DAS S DGVI +FAIT + II +GL IGA++VRS+T+ ++++G L+
Sbjct: 180 AGLALFLYLEVLDASFSFDGVIGAFAITNDIVIIALGLGIGAMFVRSLTVYLVRKGTLDD 239
Query: 296 YKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIFTGTSSTILIFLSIYSSI 343
Y YLEHG++Y+I L+VIM L ++IPE+ TG + I S++SS+
Sbjct: 240 YVYLEHGAHYAIGALAVIMLLSIRRIEIPEVVTGLVGVVFIGASLWSSV 288
>gnl|CDD|146399 pfam03741, TerC, Integral membrane protein TerC family. This
family contains a number of integral membrane proteins
that also contains the TerC protein. TerC has been
implicated in resistance to tellurium. This protein may
be involved in efflux of tellurium ions. The
tellurite-resistant Escherichia coli strain KL53 was
found during testing of the group of clinical isolates
for antibiotics and heavy metal ion resistance.
Determinant of the tellurite resistance of the strain
was located on a large conjugative plasmid. Analyses
showed, the genes terB, terC, terD and terE are
essential for conservation of the resistance. The
members of the family contain a number of conserved
aspartates that could be involved in binding to metal
ions.
Length = 184
Score = 43.2 bits (103), Expect = 1e-04
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 242 LYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEH 301
+ +E+ D SLD V ++ IT + FI++ G + +R + L+ K ++ ++ YL++
Sbjct: 110 IQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAK--LIERFPYLKY 167
Query: 302 GSYYSIFVLSVIMFL 316
+ + + V + L
Sbjct: 168 LAAAILGFIGVKLLL 182
Score = 30.9 bits (71), Expect = 0.52
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 50 IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109
+ L ++EISLS +NA + A +K+ QK+ L WGI+ A+ +RII ++ ++
Sbjct: 1 LTLYLLEISLSVDNAFVIALIFRKLPPEQQKKALFWGIIGALV-LRIILILLGSALLELF 59
Query: 110 NPI 112
+ I
Sbjct: 60 DWI 62
>gnl|CDD|31202 COG0861, TerC, Membrane protein TerC, possibly involved in
tellurium resistance [Inorganic ion transport and
metabolism].
Length = 254
Score = 35.9 bits (83), Expect = 0.015
Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 245 EIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSY 304
E+ D SLD VI++ + + F++V + + +R L+ + +L ++ L++ +
Sbjct: 141 ELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR--LLERHPTLKYLAL 198
Query: 305 YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339
+ + V + L+ + + + S+
Sbjct: 199 VILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSV 233
Score = 27.8 bits (62), Expect = 4.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 50 IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109
+ L ++EI L +NAI+ A K+ +K+ L G+ A +RII I +++
Sbjct: 21 LTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGA-LVLRIILLASISWLLTLT 79
Query: 110 NPI 112
P+
Sbjct: 80 QPL 82
>gnl|CDD|34750 COG5149, TOA1, Transcription initiation factor IIA, large chain
[Transcription].
Length = 293
Score = 33.2 bits (75), Expect = 0.10
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 43 ISTVYICIILAVV-EISLSFENAILNAKNLQKMSSIWQKRF 82
+ VY +IL V+ FE ++ L+++ ++WQ +
Sbjct: 6 VGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKL 46
>gnl|CDD|39584 KOG4383, KOG4383, KOG4383, Uncharacterized conserved protein
[Function unknown].
Length = 1354
Score = 27.4 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 305 YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339
+ +LSVI+FL +P IF+ + +L I
Sbjct: 1095 QAQLLLSVIIFLSCFFFLPIIFSHSDIILLSCFCI 1129
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.329 0.141 0.414
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,178,219
Number of extensions: 236832
Number of successful extensions: 1157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 126
Length of query: 346
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 251
Effective length of database: 4,210,882
Effective search space: 1056931382
Effective search space used: 1056931382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)