RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780228|ref|YP_003064641.1| hypothetical protein
CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 40/120 (33%)

Query: 198 EMY----SFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDA---- 249
           ++Y      V       +I +    L   L   + +       GLN+  +LE        
Sbjct: 175 DLYQTYHVLVGD-----LIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228

Query: 250 --------SLSLDGVIS--SFAITKNFFIIVIGLTIGAIYVRSMTLLMLK------QGIL 293
                   S  L GVI    + +T      ++G T G   +RS     LK      QG++
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVT----AKLLGFTPGE--LRS----YLKGATGHSQGLV 278



 Score = 36.1 bits (83), Expect = 0.013
 Identities = 58/397 (14%), Positives = 106/397 (26%), Gaps = 205/397 (51%)

Query: 25  FLCGLGIGWQFTHTLSGT---------------ISTVYICIILAVVEISLSFENAILNAK 69
           +L G  I     H L+                 I       I+A         +A+  A 
Sbjct: 95  YLEGNDI-----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149

Query: 70  NLQKMSSIWQKRFLTWGILIAVFG-----------MRIIF---PIMIVCIVSTINPIEAM 115
                             L+A+FG           +R ++    +++  ++         
Sbjct: 150 GEGNAQ------------LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LS 196

Query: 116 NLA--------IYS---------------P-QDYLKIISQAHVPISGFGGTFLMMVSLTF 151
            L         +++               P +DYL  +S   +PIS        ++ +  
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--LS---IPIS------CPLIGVI- 244

Query: 152 FFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNILPTNEMYSFVSSST---- 207
               Q            ++H         ++V + + G +   P  E+ S++  +T    
Sbjct: 245 ----Q------------LAH---------YVVTAKLLGFT---P-GELRSYLKGATGHSQ 275

Query: 208 ----AAIIIFYGINFLESVLSSDS--SNNVTHGKHGLNLFLYLEIIDASLSLDGVISSFA 261
               A  I             +DS  S            F       +           A
Sbjct: 276 GLVTAVAIA-----------ETDSWES------------F-----FVSVRK--------A 299

Query: 262 ITKNFFIIVIGLTIGAIYVRS------MTL--LMLKQGILNKYKYLEHG----SYYSIFV 309
           IT  FF   IG       VR        +L   +L+  +       E+     S     +
Sbjct: 300 ITVLFF---IG-------VRCYEAYPNTSLPPSILEDSL-------ENNEGVPSP----M 338

Query: 310 LSV----IMFLQTIVD-----IPEIFTGTSSTILIFL 337
           LS+       +Q  V+     +P         + I L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPA-----GKQVEISL 370



 Score = 33.8 bits (77), Expect = 0.058
 Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 107/284 (37%)

Query: 68  AKNLQKMSSI---WQKRF------LTW----------GILIAVFGMRIIFPI-------- 100
           A+ L ++       +K F      L W            L+++    I  P+        
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PISCPLIGVIQLAH 248

Query: 101 -MIVCIVSTINPIEAMNLAIYSPQDYLK--------IISQAHVPIS----GFGGTFLMMV 147
            ++   +    P E +       + YLK        +++   +  +     F  +    +
Sbjct: 249 YVVTAKLLGFTPGE-L-------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300

Query: 148 SLTFF--FNSQNKLHWIHF---------LEIAMSH--------LSKIKGIKIFIVLSIIF 188
           ++ FF             +         LE ++ +        LS I  +    V   + 
Sbjct: 301 TVLFFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYV- 353

Query: 189 GISN-ILPTNE-MY-SFVSSSTAAIII-----FYGIN-FLESVLSSD--SSNNVTHGKHG 237
             +N  LP  + +  S V+ +   ++       YG+N  L    +      + +   +  
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413

Query: 238 L---NLFL---------YL----EIIDASLSLDGVI---SSFAI 262
           L   N FL          L    ++I+  L  + V        I
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457



 Score = 31.8 bits (72), Expect = 0.26
 Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 102/209 (48%)

Query: 2   KSNSLYASLI---HHFRWAILVTVAG---FLCGL-----------GIGWQ---------- 34
               +  SL+    +        V+G    L GL           G+  Q          
Sbjct: 362 AGKQVEISLVNGAKNL------VVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKL 414

Query: 35  -FTHT-LSGTISTVYICIILA----VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGIL 88
            F++  L   +++ +   +L     ++   L   N   NAK++Q                
Sbjct: 415 KFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---------------- 456

Query: 89  IAVF----G--MRI----IFPIMIVCIVSTINPI---EAMNLAIYSPQDYLKIISQAHV- 134
           I V+    G  +R+    I   ++ CI     P+                       H+ 
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCI--IRLPVKWETTTQF------------KATHIL 502

Query: 135 ---P--ISGFGGTFLMMVSLTFFFNSQNK 158
              P   SG G        LT     +NK
Sbjct: 503 DFGPGGASGLG-------VLT----HRNK 520


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.6 bits (68), Expect = 0.55
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 172  LSKIKGIKIFIVLSII--FGISNILPTNEMYSFVSSS 206
            +S++  I +F+++S++  F  S I    EMY +V  S
Sbjct: 1006 ISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVS 1042


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,914,186
Number of extensions: 131053
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 25
Length of query: 346
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 253
Effective length of database: 3,438,538
Effective search space: 869950114
Effective search space used: 869950114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.4 bits)