RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] (346 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.1 bits (96), Expect = 4e-04 Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 40/120 (33%) Query: 198 EMY----SFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDA---- 249 ++Y V +I + L L + + GLN+ +LE Sbjct: 175 DLYQTYHVLVGD-----LIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228 Query: 250 --------SLSLDGVIS--SFAITKNFFIIVIGLTIGAIYVRSMTLLMLK------QGIL 293 S L GVI + +T ++G T G +RS LK QG++ Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVT----AKLLGFTPGE--LRS----YLKGATGHSQGLV 278 Score = 36.1 bits (83), Expect = 0.013 Identities = 58/397 (14%), Positives = 106/397 (26%), Gaps = 205/397 (51%) Query: 25 FLCGLGIGWQFTHTLSGT---------------ISTVYICIILAVVEISLSFENAILNAK 69 +L G I H L+ I I+A +A+ A Sbjct: 95 YLEGNDI-----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149 Query: 70 NLQKMSSIWQKRFLTWGILIAVFG-----------MRIIF---PIMIVCIVSTINPIEAM 115 L+A+FG +R ++ +++ ++ Sbjct: 150 GEGNAQ------------LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LS 196 Query: 116 NLA--------IYS---------------P-QDYLKIISQAHVPISGFGGTFLMMVSLTF 151 L +++ P +DYL +S +PIS ++ + Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--LS---IPIS------CPLIGVI- 244 Query: 152 FFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNILPTNEMYSFVSSST---- 207 Q ++H ++V + + G + P E+ S++ +T Sbjct: 245 ----Q------------LAH---------YVVTAKLLGFT---P-GELRSYLKGATGHSQ 275 Query: 208 ----AAIIIFYGINFLESVLSSDS--SNNVTHGKHGLNLFLYLEIIDASLSLDGVISSFA 261 A I +DS S F + A Sbjct: 276 GLVTAVAIA-----------ETDSWES------------F-----FVSVRK--------A 299 Query: 262 ITKNFFIIVIGLTIGAIYVRS------MTL--LMLKQGILNKYKYLEHG----SYYSIFV 309 IT FF IG VR +L +L+ + E+ S + Sbjct: 300 ITVLFF---IG-------VRCYEAYPNTSLPPSILEDSL-------ENNEGVPSP----M 338 Query: 310 LSV----IMFLQTIVD-----IPEIFTGTSSTILIFL 337 LS+ +Q V+ +P + I L Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPA-----GKQVEISL 370 Score = 33.8 bits (77), Expect = 0.058 Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 107/284 (37%) Query: 68 AKNLQKMSSI---WQKRF------LTW----------GILIAVFGMRIIFPI-------- 100 A+ L ++ +K F L W L+++ I P+ Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PISCPLIGVIQLAH 248 Query: 101 -MIVCIVSTINPIEAMNLAIYSPQDYLK--------IISQAHVPIS----GFGGTFLMMV 147 ++ + P E + + YLK +++ + + F + + Sbjct: 249 YVVTAKLLGFTPGE-L-------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300 Query: 148 SLTFF--FNSQNKLHWIHF---------LEIAMSH--------LSKIKGIKIFIVLSIIF 188 ++ FF + LE ++ + LS I + V + Sbjct: 301 TVLFFIGVRCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYV- 353 Query: 189 GISN-ILPTNE-MY-SFVSSSTAAIII-----FYGIN-FLESVLSSD--SSNNVTHGKHG 237 +N LP + + S V+ + ++ YG+N L + + + + Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413 Query: 238 L---NLFL---------YL----EIIDASLSLDGVI---SSFAI 262 L N FL L ++I+ L + V I Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457 Score = 31.8 bits (72), Expect = 0.26 Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 102/209 (48%) Query: 2 KSNSLYASLI---HHFRWAILVTVAG---FLCGL-----------GIGWQ---------- 34 + SL+ + V+G L GL G+ Q Sbjct: 362 AGKQVEISLVNGAKNL------VVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKL 414 Query: 35 -FTHT-LSGTISTVYICIILA----VVEISLSFENAILNAKNLQKMSSIWQKRFLTWGIL 88 F++ L +++ + +L ++ L N NAK++Q Sbjct: 415 KFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---------------- 456 Query: 89 IAVF----G--MRI----IFPIMIVCIVSTINPI---EAMNLAIYSPQDYLKIISQAHV- 134 I V+ G +R+ I ++ CI P+ H+ Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCI--IRLPVKWETTTQF------------KATHIL 502 Query: 135 ---P--ISGFGGTFLMMVSLTFFFNSQNK 158 P SG G LT +NK Sbjct: 503 DFGPGGASGLG-------VLT----HRNK 520 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.6 bits (68), Expect = 0.55 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 172 LSKIKGIKIFIVLSII--FGISNILPTNEMYSFVSSS 206 +S++ I +F+++S++ F S I EMY +V S Sbjct: 1006 ISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVS 1042 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.141 0.414 Gapped Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,914,186 Number of extensions: 131053 Number of successful extensions: 420 Number of sequences better than 10.0: 1 Number of HSP's gapped: 418 Number of HSP's successfully gapped: 25 Length of query: 346 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 253 Effective length of database: 3,438,538 Effective search space: 869950114 Effective search space used: 869950114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (26.4 bits)