BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] (346 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%) Query: 1 MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS 60 MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS Sbjct: 1 MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS 60 Query: 61 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY Sbjct: 61 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120 Query: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI Sbjct: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180 Query: 181 FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL 240 FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL Sbjct: 181 FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL 240 Query: 241 FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE 300 FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE Sbjct: 241 FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE 300 Query: 301 HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK 346 HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK Sbjct: 301 HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK 346 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 10/44 (22%), Positives = 28/44 (63%) Query: 246 IIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLK 289 I+D SLD V+++ + ++F ++ I + + A+ + +++ M++ Sbjct: 138 ILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIR 181 >gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] Length = 212 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 311 SVIMFLQ--TIVDIPEIFTGTSSTILIFLSIYSSIKNK 346 S+IM L+ T+ DIP++ GT + L +SI +K Sbjct: 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 >gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 430 Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 34 QFTHTLSGTISTVYICIILAVVEISLSFENAI 65 +FTHTL+G+ V C+I A++E L+ + ++ Sbjct: 377 KFTHTLNGSGVAVGRCLI-AILENYLNADGSV 407 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 205 SSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLF 241 + A I + +FLE+++ SD + N+ GL+ F Sbjct: 320 TPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 >gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 22.7 bits (47), Expect = 9.6, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 225 SDSSNNVTHGKHGLNLFLYLEIIDASLSLDGV 256 SD S V H + +Y EI+D +S DG Sbjct: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.329 0.141 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,008 Number of Sequences: 1233 Number of extensions: 8658 Number of successful extensions: 53 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 17 length of query: 346 length of database: 328,796 effective HSP length: 75 effective length of query: 271 effective length of database: 236,321 effective search space: 64042991 effective search space used: 64042991 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 39 (19.6 bits)