HHsearch alignment for GI: 254780229 and conserved domain: COG0507
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].
Probab=94.89 E-value=0.031 Score=38.20 Aligned_cols=45 Identities=33% Similarity=0.566 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEECCHHHCCHHHHHH---HHHHCCEEEEEECCCCCCCC
Q ss_conf 8522541078860632369899889---88611828996077866862
Q gi|254780229|r 1356 EPKDVKFDLVIMDESSQIKPEDALG---VIARGKQIVVVGDPKQLPPT 1400 (1775)
Q Consensus 1356 ~~~~~~FD~VI~DEASQ~~~~~al~---al~rakqvvvvGD~kQlpPt 1400 (1775)
T Consensus 402 ~~~~~~~d~~iiDe~~ml~~~~~~~l~~~i~~~a~~i~vGD~~ql~~v 449 (696)
T COG0507 402 NEEPLDGDLLIIDEASMLDTSLAFGLLSAIGKLAKVILVGDVDQLPSV 449 (696)
T ss_pred CCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCC
T ss_conf 545543552577304330899876665035446768885263014500