HHsearch alignment for GI: 254780229 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].

Probab=96.50  E-value=0.018  Score=40.80  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=28.3

Q ss_pred             EEEECHHHHHHH--CC-CCCCCCCEEEECCHHHCCHHH--HHHHHHHCCEEEEEE
Q ss_conf             899257799872--58-522541078860632369899--889886118289960
Q gi|254780229|r 1343 CFMMSPMSVANY--LE-PKDVKFDLVIMDESSQIKPED--ALGVIARGKQIVVVG 1392 (1775)
Q Consensus      1343 ~~~msp~sva~~--l~-~~~~~FD~VI~DEASQ~~~~~--al~al~rakqvvvvG 1392 (1775)
T Consensus       125 i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~-~LG  178 (442)
T COG1061         125 VTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP-RLG  178 (442)
T ss_pred             EEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEE
T ss_conf             899983897641555540356667599975245784779999997510310-467