HHsearch alignment for GI: 254780229 and conserved domain: COG1110

Probab=97.54  E-value=0.0013  Score=52.52  Aligned_cols=87  Identities=24%  Similarity=0.396  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHCC-----CCCEEEECC
Q ss_conf             468999998514895599428787703899999999996-79828996010589999998644358-----441365402
Q gi|254780229|r  407 SSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAIEVVRHRLEKAG-----LGEFCLELH  480 (1775)
Q Consensus       407 sSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aALdVV~~RL~~~g-----Lg~~cleLH  480 (1775)
T Consensus        85 s~QR~WakR~~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh  162 (1187)
T COG1110          85 SAQRVWAKRLVRGKSFAIIAPTGVGKT-TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YH  162 (1187)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE-EC
T ss_conf             788999999873784489827887654-7999999998755874999966789999999999998865378524665-31


Q ss_pred             CC--CHHHHHHHHHHHH
Q ss_conf             66--1108999999999
Q gi|254780229|r  481 SH--KVHKRAILDDLRK  495 (1775)
Q Consensus       481 s~--ka~k~~vl~~L~~  495 (1775)
T Consensus       163 ~~l~~~ekee~le~i~~  179 (1187)
T COG1110         163 SALPTKEKEEALERIES  179 (1187)
T ss_pred             CCCCHHHHHHHHHHHHC
T ss_conf             23665779999999865