HHsearch alignment for GI: 254780229 and conserved domain: COG1112

>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].
Probab=100.00  E-value=1.7e-34  Score=374.59  Aligned_cols=287  Identities=28%  Similarity=0.342  Sum_probs=221.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCCCCCEEEECCHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCHH
Q ss_conf             86689999987898774067899257799872585225410788606323698998898861182899607786686201
Q gi|254780229|r 1323 NIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALGVIARGKQIVVVGDPKQLPPTRF 1402 (1775)
Q Consensus      1323 ~~~~R~l~~~a~~~~~~l~P~~~msp~sva~~l~~~~~~FD~VI~DEASQ~~~~~al~al~rakqvvvvGD~kQlpPt~f 1402 (1775)
T Consensus       451 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~fd~viiDEAsQ~~~~~~~~~l~~~~~~il~GD~kQL~p~~~  529 (767)
T COG1112         451 LKELRRLKKKAVTKILEAAD-VVLSTLSIAGFSILKKYEFDYVIIDEASQATEPSALIALSRAKKVILVGDHKQLPPTVF  529 (767)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCCEEEEECCCHHCCHHHHHHHHHHCEEEEECCHHHCCCCCC
T ss_conf             34433555666888888776-54041014443221003577899944110111233323534255899146310787200


Q ss_pred             HHHCCCCCCCCCCHHHCCCCCHHHHHHHHH--CCCCEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC-------
Q ss_conf             100013444432011014400079999975--58752053055799789999985036980476468776666-------
Q gi|254780229|r 1403 FDHDNDQEDYDEEVAAVSQTESILDALLPL--FSMRRLQWHYRSLNENLIACSNYYFYDNSLIVFPSPYTSVD------- 1473 (1775)
Q Consensus      1403 f~~~~~~~~~~~~~~~~~~~eSild~~~~~--~p~~~L~~HyRs~~e~lI~fSN~~fY~~~L~~~psp~~~~~------- 1473 (1775)
T Consensus       530 ~~~~-----~~~~-----~~~slf~~~~~~~~~~~~~L~~qYR-m~~~i~~f~s~~fY~~~l~~~~~~~~~~~~~~~~~~  598 (767)
T COG1112         530 FKES-----SPEG-----LSASLFERLIDNGPEVVYLLRVQYR-MHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPE  598 (767)
T ss_pred             HHHC-----CCHH-----HHHHHHHHHHHHCCCHHHHHHHHHC-CCHHHHHCCHHCEECCCCEECCCHHHHHHCCCCCCC
T ss_conf             2112-----6301-----2267899997404313367787617-788898331322557763024105544302455434


Q ss_pred             ---CCCEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             ---68848997289721----788898999999999999953185-7718998199899999999999993129768999
Q gi|254780229|r 1474 ---RYGVGFTHVKNGVV----VDQGNPEEARVIALAVKDHALRYP-EESLGVIAMNAKQRDLIESTINKLCRKDSEVEKA 1545 (1775)
Q Consensus      1474 ---~~~v~~~~v~~g~~----~~~~N~~EA~~vv~~v~~~~~~~~-~~siGVvt~~~~Q~~~I~~~l~~~~~~~~~~~~~ 1545 (1775)
T Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~s~~n~~ea~~v~~~~~~~~~~~~~~~~igvispy~~q~~~i~~~~~~~~---------  669 (767)
T COG1112         599 VVISNPLEFYDTLGAEEFFESKSKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAG---------  669 (767)
T ss_pred             CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCEEECCCHHHHHHHHHHHHHCC---------
T ss_conf             46664246776423655665311222544659999999999834524303154453889999999876415---------


Q ss_pred             HHHHCCCCCCEEECCHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHC
Q ss_conf             76411478985854256808666788999966507888876200114777656246899999832142698870387887
Q gi|254780229|r 1546 ISKLRMHADPFFIKNLENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTMRYLDV 1625 (1775)
Q Consensus      1546 ~~~~~~~~e~~fvknle~vQGdERDvI~~S~~yg~~~~~g~~~~~fGpln~~gg~rRlNVa~sRAr~~~~v~~s~~~~~i 1625 (1775)
T Consensus       670 --------~~v~v~tVd~fQG~EkdvIi~S~v~s~~~-~-------~~i~~l~d~rRLNVAlTRAk~~livvg--~~~~l  731 (767)
T COG1112         670 --------KGVEVGTVDGFQGREKDVIILSLVRSNDD-K-------GEIGFLGDPRRLNVALTRAKRKLIVVG--SSSTL  731 (767)
T ss_pred             --------CCCEECCCCCCCCCCCCEEEEEEEECCCC-C-------CCCCCCCCCCCEEEHHHHCCCCEEEEE--CHHHC
T ss_conf             --------67257887661798665799986541787-7-------753213687521146444026459996--60331


Q ss_pred             CHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             96653543489999999997406
Q gi|254780229|r 1626 VVDIDSKLGIRVMRDFLHFAETG 1648 (1775)
Q Consensus      1626 ~~~~~~~~g~~~lk~~l~~a~~g 1648 (1775)
T Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~  754 (767)
T COG1112         732 ESDPLYKRLINDLKRKGLLAELN  754 (767)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             45613789999998733422023