HHsearch alignment for GI: 254780229 and conserved domain: COG1112
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.7e-34 Score=374.59 Aligned_cols=287 Identities=28% Similarity=0.342 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCCCCCEEEECCHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCHH
Q ss_conf 86689999987898774067899257799872585225410788606323698998898861182899607786686201
Q gi|254780229|r 1323 NIPIRQLISRAKNSLLQLKPCFMMSPMSVANYLEPKDVKFDLVIMDESSQIKPEDALGVIARGKQIVVVGDPKQLPPTRF 1402 (1775)
Q Consensus 1323 ~~~~R~l~~~a~~~~~~l~P~~~msp~sva~~l~~~~~~FD~VI~DEASQ~~~~~al~al~rakqvvvvGD~kQlpPt~f 1402 (1775)
T Consensus 451 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~fd~viiDEAsQ~~~~~~~~~l~~~~~~il~GD~kQL~p~~~ 529 (767)
T COG1112 451 LKELRRLKKKAVTKILEAAD-VVLSTLSIAGFSILKKYEFDYVIIDEASQATEPSALIALSRAKKVILVGDHKQLPPTVF 529 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCCEEEEECCCHHCCHHHHHHHHHHCEEEEECCHHHCCCCCC
T ss_conf 34433555666888888776-54041014443221003577899944110111233323534255899146310787200
Q ss_pred HHHCCCCCCCCCCHHHCCCCCHHHHHHHHH--CCCCEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC-------
Q ss_conf 100013444432011014400079999975--58752053055799789999985036980476468776666-------
Q gi|254780229|r 1403 FDHDNDQEDYDEEVAAVSQTESILDALLPL--FSMRRLQWHYRSLNENLIACSNYYFYDNSLIVFPSPYTSVD------- 1473 (1775)
Q Consensus 1403 f~~~~~~~~~~~~~~~~~~~eSild~~~~~--~p~~~L~~HyRs~~e~lI~fSN~~fY~~~L~~~psp~~~~~------- 1473 (1775)
T Consensus 530 ~~~~-----~~~~-----~~~slf~~~~~~~~~~~~~L~~qYR-m~~~i~~f~s~~fY~~~l~~~~~~~~~~~~~~~~~~ 598 (767)
T COG1112 530 FKES-----SPEG-----LSASLFERLIDNGPEVVYLLRVQYR-MHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPE 598 (767)
T ss_pred HHHC-----CCHH-----HHHHHHHHHHHHCCCHHHHHHHHHC-CCHHHHHCCHHCEECCCCEECCCHHHHHHCCCCCCC
T ss_conf 2112-----6301-----2267899997404313367787617-788898331322557763024105544302455434
Q ss_pred ---CCCEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf ---68848997289721----788898999999999999953185-7718998199899999999999993129768999
Q gi|254780229|r 1474 ---RYGVGFTHVKNGVV----VDQGNPEEARVIALAVKDHALRYP-EESLGVIAMNAKQRDLIESTINKLCRKDSEVEKA 1545 (1775)
Q Consensus 1474 ---~~~v~~~~v~~g~~----~~~~N~~EA~~vv~~v~~~~~~~~-~~siGVvt~~~~Q~~~I~~~l~~~~~~~~~~~~~ 1545 (1775)
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~s~~n~~ea~~v~~~~~~~~~~~~~~~~igvispy~~q~~~i~~~~~~~~--------- 669 (767)
T COG1112 599 VVISNPLEFYDTLGAEEFFESKSKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAG--------- 669 (767)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCEEECCCHHHHHHHHHHHHHCC---------
T ss_conf 46664246776423655665311222544659999999999834524303154453889999999876415---------
Q ss_pred HHHHCCCCCCEEECCHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHC
Q ss_conf 76411478985854256808666788999966507888876200114777656246899999832142698870387887
Q gi|254780229|r 1546 ISKLRMHADPFFIKNLENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTMRYLDV 1625 (1775)
Q Consensus 1546 ~~~~~~~~e~~fvknle~vQGdERDvI~~S~~yg~~~~~g~~~~~fGpln~~gg~rRlNVa~sRAr~~~~v~~s~~~~~i 1625 (1775)
T Consensus 670 --------~~v~v~tVd~fQG~EkdvIi~S~v~s~~~-~-------~~i~~l~d~rRLNVAlTRAk~~livvg--~~~~l 731 (767)
T COG1112 670 --------KGVEVGTVDGFQGREKDVIILSLVRSNDD-K-------GEIGFLGDPRRLNVALTRAKRKLIVVG--SSSTL 731 (767)
T ss_pred --------CCCEECCCCCCCCCCCCEEEEEEEECCCC-C-------CCCCCCCCCCCEEEHHHHCCCCEEEEE--CHHHC
T ss_conf --------67257887661798665799986541787-7-------753213687521146444026459996--60331
Q ss_pred CHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 96653543489999999997406
Q gi|254780229|r 1626 VVDIDSKLGIRVMRDFLHFAETG 1648 (1775)
Q Consensus 1626 ~~~~~~~~g~~~lk~~l~~a~~g 1648 (1775)
T Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~ 754 (767)
T COG1112 732 ESDPLYKRLINDLKRKGLLAELN 754 (767)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 45613789999998733422023