HHsearch alignment for GI: 254780229 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=97.35 E-value=0.0014 Score=52.16 Aligned_cols=80 Identities=23% Similarity=0.381 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHCC----CCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 734689999985148----9559942878770389999999999679828996010589999998644358441365402
Q gi|254780229|r 405 SDSSQHSAVIDVING----KNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH 480 (1775)
Q Consensus 405 aDsSQ~~av~~~~~g----~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLH 480 (1775)
T Consensus 199 Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r-Fg~~v~vlH 277 (730)
T COG1198 199 LNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR-FGAKVAVLH 277 (730)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH-HCCCHHHHC
T ss_conf 3889999999999750566653676777885899999999999975987999956534569999999998-678745314
Q ss_pred CCCHH
Q ss_conf 66110
Q gi|254780229|r 481 SHKVH 485 (1775)
Q Consensus 481 s~ka~ 485 (1775)
T Consensus 278 S~Ls~ 282 (730)
T COG1198 278 SGLSP 282 (730)
T ss_pred CCCCH
T ss_conf 65792