HHsearch alignment for GI: 254780229 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=97.35  E-value=0.0014  Score=52.16  Aligned_cols=80  Identities=23%  Similarity=0.381  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHCC----CCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             734689999985148----9559942878770389999999999679828996010589999998644358441365402
Q gi|254780229|r  405 SDSSQHSAVIDVING----KNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELH  480 (1775)
Q Consensus       405 aDsSQ~~av~~~~~g----~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLH  480 (1775)
T Consensus       199 Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r-Fg~~v~vlH  277 (730)
T COG1198         199 LNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR-FGAKVAVLH  277 (730)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH-HCCCHHHHC
T ss_conf             3889999999999750566653676777885899999999999975987999956534569999999998-678745314


Q ss_pred             CCCHH
Q ss_conf             66110
Q gi|254780229|r  481 SHKVH  485 (1775)
Q Consensus       481 s~ka~  485 (1775)
T Consensus       278 S~Ls~  282 (730)
T COG1198         278 SGLSP  282 (730)
T ss_pred             CCCCH
T ss_conf             65792