HHsearch alignment for GI: 254780229 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=95.80 E-value=0.069 Score=34.63 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=33.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCHHHH-H-HHHHHHHHCCCCCEEEE
Q ss_conf 5994287877038999999999-96798289960105899-9-99986443584413654
Q gi|254780229|r 422 LIIEGPPGTGKSQTITNIIAAA-MLHGKKILFCAQKMAAI-E-VVRHRLEKAGLGEFCLE 478 (1775)
Q Consensus 422 ~vi~GPPGTGKSQTIaNlIa~~-la~Gk~VLfVaeK~aAL-d-VV~~RL~~~gLg~~cle 478 (1775)
T Consensus 48 l~i~G~~G~GKTH-LL~A~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~l~~--~d~l~ID 104 (234)
T PRK05642 48 IYLWGKDGVGRSH-LLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQ--YELVCID 104 (234)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH--CCEEEEE
T ss_conf 8998899998899-9999999998079967997899987544999862422--7989893