HHsearch alignment for GI: 254780229 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.83 E-value=0.0056 Score=45.96 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=43.6
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 5599428787703899999999996798289960---10589999998644358441
Q gi|254780229|r 421 NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCA---QKMAAIEVVRHRLEKAGLGE 474 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVa---eK~aALdVV~~RL~~~gLg~ 474 (1775)
T Consensus 77 vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~ 133 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV 133 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCE
T ss_conf 899988898988999999999998679908999838888889999999999819953