HHsearch alignment for GI: 254780229 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=94.08 E-value=0.27 Score=28.45 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCHHHH-HHHHHHHHHCCCCCEEEEC
Q ss_conf 6677346899999851489559942878770389999999999679828996-0105899-9999864435844136540
Q gi|254780229|r 402 IDDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFC-AQKMAAI-EVVRHRLEKAGLGEFCLEL 479 (1775)
Q Consensus 402 ~~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfV-aeK~aAL-dVV~~RL~~~gLg~~cleL 479 (1775)
T Consensus 139 ~l~TGIraID~l~pigrGQR~gIfg~sGvGKs-tLl~~i~~~~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~ 217 (432)
T PRK06793 139 VFETGIKSIDSMLTIGIGQKIGIFAGSGVGKS-TLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVV 217 (432)
T ss_pred CCCCCCCHHHHCCCCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 40048731000156124626666326898789-99999987245786579998886279999999986446752127887
Q ss_pred C
Q ss_conf 2
Q gi|254780229|r 480 H 480 (1775)
Q Consensus 480 H 480 (1775)
T Consensus 218 a 218 (432)
T PRK06793 218 A 218 (432)
T ss_pred E
T ss_conf 2