HHsearch alignment for GI: 254780229 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=96.81 E-value=0.052 Score=35.94 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHH-HHHCCCEEEEEECCHHHH--HHHHHHHHHCCCCCEEEE
Q ss_conf 895599428787703899999999-996798289960105899--999986443584413654
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAA-AMLHGKKILFCAQKMAAI--EVVRHRLEKAGLGEFCLE 478 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~-~la~Gk~VLfVaeK~aAL--dVV~~RL~~~gLg~~cle 478 (1775)
T Consensus 45 ~~~l~l~G~~G~GKTH-LLqA~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~--~dll~iD 104 (235)
T PRK08084 45 SGYIYLWGREGAGRSH-LLHAACAELSQRGDAVGYVPLDKRAWFVPEVLEGMEQ--LSLVCID 104 (235)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH--CCEEEEE
T ss_conf 8769998999988899-9999999997079857998779866517999987641--8989982