HHsearch alignment for GI: 254780229 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=96.81  E-value=0.052  Score=35.94  Aligned_cols=57  Identities=19%  Similarity=0.335  Sum_probs=36.1

Q ss_pred             CCCEEEECCCCCCCHHHHHHHHHH-HHHCCCEEEEEECCHHHH--HHHHHHHHHCCCCCEEEE
Q ss_conf             895599428787703899999999-996798289960105899--999986443584413654
Q gi|254780229|r  419 GKNLIIEGPPGTGKSQTITNIIAA-AMLHGKKILFCAQKMAAI--EVVRHRLEKAGLGEFCLE  478 (1775)
Q Consensus       419 g~~~vi~GPPGTGKSQTIaNlIa~-~la~Gk~VLfVaeK~aAL--dVV~~RL~~~gLg~~cle  478 (1775)
T Consensus        45 ~~~l~l~G~~G~GKTH-LLqA~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~--~dll~iD  104 (235)
T PRK08084         45 SGYIYLWGREGAGRSH-LLHAACAELSQRGDAVGYVPLDKRAWFVPEVLEGMEQ--LSLVCID  104 (235)
T ss_pred             CCEEEEECCCCCCHHH-HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH--CCEEEEE
T ss_conf             8769998999988899-9999999997079857998779866517999987641--8989982