HHsearch alignment for GI: 254780229 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.03 E-value=0.015 Score=41.41 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=51.8
Q ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--CE----EEECC---CCCHHH
Q ss_conf 5148955994287877038999999999967982899601058999999864435844--13----65402---661108
Q gi|254780229|r 416 VINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLG--EF----CLELH---SHKVHK 486 (1775)
Q Consensus 416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg--~~----cleLH---s~ka~k 486 (1775)
T Consensus 263 l~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l-~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~~~ 341 (501)
T PRK09302 263 FFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQL-VRNATSWGIDLEEMERKGLLKIICARPESTGL 341 (501)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHHHCCCCHHHHHHCCCEEEEEECCCCCCH
T ss_conf 75894699988999888999999999998659908999996799999-99999739984888748947999837000598
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999863
Q gi|254780229|r 487 RAILDDLRKRIDN 499 (1775)
Q Consensus 487 ~~vl~~L~~~le~ 499 (1775)
T Consensus 342 ~e~~~~i~~~v~~ 354 (501)
T PRK09302 342 EDHLQIIKREIEE 354 (501)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999997