HHsearch alignment for GI: 254780229 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.03  E-value=0.015  Score=41.41  Aligned_cols=83  Identities=19%  Similarity=0.359  Sum_probs=51.8

Q ss_pred             HHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--CE----EEECC---CCCHHH
Q ss_conf             5148955994287877038999999999967982899601058999999864435844--13----65402---661108
Q gi|254780229|r  416 VINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLG--EF----CLELH---SHKVHK  486 (1775)
Q Consensus       416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg--~~----cleLH---s~ka~k  486 (1775)
T Consensus       263 l~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l-~~~a~~~G~dl~~~~~~G~l~i~~~~p~~~~~  341 (501)
T PRK09302        263 FFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQL-VRNATSWGIDLEEMERKGLLKIICARPESTGL  341 (501)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHHHCCCCHHHHHHCCCEEEEEECCCCCCH
T ss_conf             75894699988999888999999999998659908999996799999-99999739984888748947999837000598


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999863
Q gi|254780229|r  487 RAILDDLRKRIDN  499 (1775)
Q Consensus       487 ~~vl~~L~~~le~  499 (1775)
T Consensus       342 ~e~~~~i~~~v~~  354 (501)
T PRK09302        342 EDHLQIIKREIEE  354 (501)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999997