HHsearch alignment for GI: 254780229 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.19 E-value=0.0094 Score=43.63 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=39.7
Q ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CC-CEEEEEE---CCHHHHHHHHH
Q ss_conf 514895599428787703899999999996-79-8289960---10589999998
Q gi|254780229|r 416 VINGKNLIIEGPPGTGKSQTITNIIAAAML-HG-KKILFCA---QKMAAIEVVRH 465 (1775)
Q Consensus 416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~G-k~VLfVa---eK~aALdVV~~ 465 (1775)
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~ 399 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS 399 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 5407647874377767311799999999997399818999726640879999999