HHsearch alignment for GI: 254780229 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=95.76  E-value=0.033  Score=37.94  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHH-CCC-CCEEEE
Q ss_conf             66773468999998514895599428787703899999999996-798289960105899999986443-584-413654
Q gi|254780229|r  402 IDDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAIEVVRHRLEK-AGL-GEFCLE  478 (1775)
Q Consensus       402 ~~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aALdVV~~RL~~-~gL-g~~cle  478 (1775)
T Consensus        13 ~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~   91 (764)
T PRK13766         13 TIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV   91 (764)
T ss_pred             CCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             776538799999999858-9899959986689999999999997489889998588889999999999970999552899


Q ss_pred             CCCCC
Q ss_conf             02661
Q gi|254780229|r  479 LHSHK  483 (1775)
Q Consensus       479 LHs~k  483 (1775)
T Consensus        92 ltG~~   96 (764)
T PRK13766         92 LTGEI   96 (764)
T ss_pred             EECCC
T ss_conf             98887