HHsearch alignment for GI: 254780229 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=95.76 E-value=0.033 Score=37.94 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHH-CCC-CCEEEE
Q ss_conf 66773468999998514895599428787703899999999996-798289960105899999986443-584-413654
Q gi|254780229|r 402 IDDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAIEVVRHRLEK-AGL-GEFCLE 478 (1775)
Q Consensus 402 ~~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aALdVV~~RL~~-~gL-g~~cle 478 (1775)
T Consensus 13 ~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ 91 (764)
T PRK13766 13 TIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV 91 (764)
T ss_pred CCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 776538799999999858-9899959986689999999999997489889998588889999999999970999552899
Q ss_pred CCCCC
Q ss_conf 02661
Q gi|254780229|r 479 LHSHK 483 (1775)
Q Consensus 479 LHs~k 483 (1775)
T Consensus 92 ltG~~ 96 (764)
T PRK13766 92 LTGEI 96 (764)
T ss_pred EECCC
T ss_conf 98887