HHsearch alignment for GI: 254780229 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=96.09 E-value=0.011 Score=42.92 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=36.9
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC---CEEEEEECCHHHHHH
Q ss_conf 9851489559942878770389999999999679---828996010589999
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHG---KKILFCAQKMAAIEV 462 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~G---k~VLfVaeK~aALdV 462 (1775)
T Consensus 139 ~aV~~r~nilVsGgTGSGKT-TllnaL~~~i~~~~p~eR-ivtIEDt~EL~~ 188 (323)
T PRK13833 139 SAISSRLNIVISGGTGSGKT-TLANAVIAEIVASAPEDR-LVILEDTAEIQC 188 (323)
T ss_pred HHHHCCCCEEEECCCCCCHH-HHHHHHHHHHCCCCCHHE-EEEECCCCCCCC
T ss_conf 99981896899917777568-999999986402893233-999457501146