HHsearch alignment for GI: 254780229 and conserved domain: PRK13853

>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=95.86  E-value=0.11  Score=32.49  Aligned_cols=44  Identities=30%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHHH
Q ss_conf             895599428787703899999999996-----79828996010589999998
Q gi|254780229|r  419 GKNLIIEGPPGTGKSQTITNIIAAAML-----HGKKILFCAQKMAAIEVVRH  465 (1775)
Q Consensus       419 g~~~vi~GPPGTGKSQTIaNlIa~~la-----~Gk~VLfVaeK~aALdVV~~  465 (1775)
T Consensus       427 GHt-~I~G~TGsGKT-tll~fL~aq~~ky~~~~~~~~~~-fDkd~s~~i~~~  475 (789)
T PRK13853        427 GMT-AIFGPIGRGKT-TLMTFILAMLEQSMVDRAGAVVF-FDKDRGGELLVR  475 (789)
T ss_pred             CCE-EEECCCCCCHH-HHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHHHH
T ss_conf             744-88789999889-99999999999742235770899-958863899999