HHsearch alignment for GI: 254780229 and conserved domain: PRK13853
>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=95.86 E-value=0.11 Score=32.49 Aligned_cols=44 Identities=30% Similarity=0.429 Sum_probs=29.1
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHHH
Q ss_conf 895599428787703899999999996-----79828996010589999998
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAAAML-----HGKKILFCAQKMAAIEVVRH 465 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~~la-----~Gk~VLfVaeK~aALdVV~~ 465 (1775)
T Consensus 427 GHt-~I~G~TGsGKT-tll~fL~aq~~ky~~~~~~~~~~-fDkd~s~~i~~~ 475 (789)
T PRK13853 427 GMT-AIFGPIGRGKT-TLMTFILAMLEQSMVDRAGAVVF-FDKDRGGELLVR 475 (789)
T ss_pred CCE-EEECCCCCCHH-HHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHHHH
T ss_conf 744-88789999889-99999999999742235770899-958863899999