HHsearch alignment for GI: 254780229 and conserved domain: PRK13889

>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=97.51  E-value=0.00093  Score=54.13  Aligned_cols=149  Identities=14%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             CCCEEEECCHHHCCHHHHHHHHH----HCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
Q ss_conf             41078860632369899889886----11828996077866862011000134444320110144000799999755875
Q gi|254780229|r 1361 KFDLVIMDESSQIKPEDALGVIA----RGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMR 1436 (1775)
Q Consensus      1361 ~FD~VI~DEASQ~~~~~al~al~----rakqvvvvGD~kQlpPt~ff~~~~~~~~~~~~~~~~~~~eSild~~~~~~p~~ 1436 (1775)
T Consensus       433 ~~dVlVVDEAGMVgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeA--------------------GaaFral~er~G~a  492 (992)
T PRK13889        433 ARDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA--------------------GAAFRSIHERHGGA  492 (992)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCC--------------------CHHHHHHHHHCCCE
T ss_conf             9858999676557749999999999984998999488777188646--------------------88999999851967


Q ss_pred             EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEE
Q ss_conf             2053055799789999985036980476468776666688489972897217888989999-999999999531857718
Q gi|254780229|r 1437 RLQWHYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEAR-VIALAVKDHALRYPEESL 1515 (1775)
Q Consensus      1437 ~L~~HyRs~~e~lI~fSN~~fY~~~L~~~psp~~~~~~~~v~~~~v~~g~~~~~~N~~EA~-~vv~~v~~~~~~~~~~si 1515 (1775)
T Consensus       493 eLteIrRQr~~w~ReAS~-~lA~G~~-----------~~AL~~Y-~~~G~V~~~~treea~~~lv~~W~~Dr~~~p~~s~  559 (992)
T PRK13889        493 EIGEVRRQREDWQRDATR-DLATGRT-----------GEALDAY-DAHGMVHAAETREQAREDLIDRWDRDRQASPDRSR  559 (992)
T ss_pred             EEEHEECCCCHHHHHHHH-HHHCCCH-----------HHHHHHH-HHCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             510222148799999999-9875888-----------8999999-97799745777999999999999988751887635


Q ss_pred             EEEECCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             998199899999999999993129768
Q gi|254780229|r 1516 GVIAMNAKQRDLIESTINKLCRKDSEV 1542 (1775)
Q Consensus      1516 GVvt~~~~Q~~~I~~~l~~~~~~~~~~ 1542 (1775)
T Consensus       560 iiLA~tN~dVraLN~~aR~~l~~~G~L  586 (992)
T PRK13889        560 IILTHTNDEVRALNEAARERMRAAGDL  586 (992)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999464589999999999999975987