HHsearch alignment for GI: 254780229 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=97.51 E-value=0.00093 Score=54.13 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=71.3
Q ss_pred CCCEEEECCHHHCCHHHHHHHHH----HCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 41078860632369899889886----11828996077866862011000134444320110144000799999755875
Q gi|254780229|r 1361 KFDLVIMDESSQIKPEDALGVIA----RGKQIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLFSMR 1436 (1775)
Q Consensus 1361 ~FD~VI~DEASQ~~~~~al~al~----rakqvvvvGD~kQlpPt~ff~~~~~~~~~~~~~~~~~~~eSild~~~~~~p~~ 1436 (1775)
T Consensus 433 ~~dVlVVDEAGMVgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeA--------------------GaaFral~er~G~a 492 (992)
T PRK13889 433 ARDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA--------------------GAAFRSIHERHGGA 492 (992)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCC--------------------CHHHHHHHHHCCCE
T ss_conf 9858999676557749999999999984998999488777188646--------------------88999999851967
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEE
Q ss_conf 2053055799789999985036980476468776666688489972897217888989999-999999999531857718
Q gi|254780229|r 1437 RLQWHYRSLNENLIACSNYYFYDNSLIVFPSPYTSVDRYGVGFTHVKNGVVVDQGNPEEAR-VIALAVKDHALRYPEESL 1515 (1775)
Q Consensus 1437 ~L~~HyRs~~e~lI~fSN~~fY~~~L~~~psp~~~~~~~~v~~~~v~~g~~~~~~N~~EA~-~vv~~v~~~~~~~~~~si 1515 (1775)
T Consensus 493 eLteIrRQr~~w~ReAS~-~lA~G~~-----------~~AL~~Y-~~~G~V~~~~treea~~~lv~~W~~Dr~~~p~~s~ 559 (992)
T PRK13889 493 EIGEVRRQREDWQRDATR-DLATGRT-----------GEALDAY-DAHGMVHAAETREQAREDLIDRWDRDRQASPDRSR 559 (992)
T ss_pred EEEHEECCCCHHHHHHHH-HHHCCCH-----------HHHHHHH-HHCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 510222148799999999-9875888-----------8999999-97799745777999999999999988751887635
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 998199899999999999993129768
Q gi|254780229|r 1516 GVIAMNAKQRDLIESTINKLCRKDSEV 1542 (1775)
Q Consensus 1516 GVvt~~~~Q~~~I~~~l~~~~~~~~~~ 1542 (1775)
T Consensus 560 iiLA~tN~dVraLN~~aR~~l~~~G~L 586 (992)
T PRK13889 560 IILTHTNDEVRALNEAARERMRAAGDL 586 (992)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999464589999999999999975987