HHsearch alignment for GI: 254780229 and conserved domain: PRK13898
>PRK13898 type IV secretion system ATPase VirB4; Provisional.
Probab=96.02 E-value=0.12 Score=32.26 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=40.0
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHH---HCCCCCEEEECCCCCHHHHH
Q ss_conf 89559942878770389999999999679828996010589999998-------644---35844136540266110899
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRH-------RLE---KAGLGEFCLELHSHKVHKRA 488 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~-------RL~---~~gLg~~cleLHs~ka~k~~ 488 (1775)
T Consensus 447 G-HtlI~G~TGsGKT-tl~~fL~aq~~ky~~~~f~fDkd~~~~i~~~a~GG~Y~~l~~g~~tg~nP~~l--~dt~~n~-~ 521 (800)
T PRK13898 447 G-HTLIIGPTGAGKT-VLMNFLCAQAMKFSPRMFFFDKDRGAEIFIRALNGVYTVIEPRLKCNFNPLQL--DDTPENR-T 521 (800)
T ss_pred C-CEEEECCCCCCHH-HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCCCC--CCCHHHH-H
T ss_conf 7-5699899999899-99999999987548879999799986999998298887437998568687779--9986788-9
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780229|r 489 ILDDLRKR 496 (1775)
Q Consensus 489 vl~~L~~~ 496 (1775)
T Consensus 522 fl~~~l~~ 529 (800)
T PRK13898 522 FLMEWLKV 529 (800)
T ss_pred HHHHHHHH
T ss_conf 99999999