HHsearch alignment for GI: 254780229 and conserved domain: TIGR00609
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=95.83 E-value=0.18 Score=30.16 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=50.7
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCC--------C----EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9559942878770389999999999679--------8----289960105899999986443584413654026
Q gi|254780229|r 420 KNLIIEGPPGTGKSQTITNIIAAAMLHG--------K----KILFCAQKMAAIEVVRHRLEKAGLGEFCLELHS 481 (1775)
Q Consensus 420 ~~~vi~GPPGTGKSQTIaNlIa~~la~G--------k----~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs 481 (1775)
T Consensus 10 g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~-~i~~a~~~~~~ 82 (1324)
T TIGR00609 10 GTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRE-RIHEALRALKA 82 (1324)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 40688741761489999999999998515122024434612121112227888998899888-89999999864