HHsearch alignment for GI: 254780229 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=98.18 E-value=0.0023 Score=50.03 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 89559942878770389999999999679828996010589999998644358441365402661108999999999986
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHKVHKRAILDDLRKRID 498 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs~ka~k~~vl~~L~~~le 498 (1775)
T Consensus 30 l~~f~i~G~tGAGKt-sLldAI~yALY-GkP~~~~s~~~~~~~~~~~~~~~~~~~~lef~~---~~~~yR~~r~~~~~~~ 104 (1063)
T TIGR00618 30 LKLFVICGKTGAGKT-SLLDAITYALY-GKPVPRESEVVASKNSLSRADSEEALAELEFAL---DTKLYRVFRSLRVERR 104 (1063)
T ss_pred CCEEEEECCCCCCHH-HHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE---CCCHHHHHHHHHHHHC
T ss_conf 573677788998354-59999999872-888775146788875420010787765464013---5601146776654513
Q ss_pred HHCCCC-C--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC
Q ss_conf 311247-1--------5899999999999999999999999978854025789999999998851222123310
Q gi|254780229|r 499 NRNIKT-V--------PQEIDVEITRYEELKGQLNQYAQEINQIWKNTELSIHQILMGAARYRHNLPLDPVQLH 563 (1775)
Q Consensus 499 ~~~~~~-~--------~~e~e~~~~~L~~~r~~L~~~~~~L~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~l~ 563 (1775)
T Consensus 105 ~R~~~~~~q~~~~~~~~~GWe~i~a~~--~~~~~~~~~~~~kLdy~~F~~~~lL~QG~~~~FL~~~s~ekk~~L 176 (1063)
T TIGR00618 105 QRESEEEVQVKVEEEKARGWEKILAKK--LKETEELIAKLLKLDYKTFTRVVLLPQGEFDEFLKAKSKEKKELL 176 (1063)
T ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHEECCCHHHHHHHHCCCHHHHHHH
T ss_conf 789876410353430356079998633--358999999984464214120000474158998611836799998