HHsearch alignment for GI: 254780229 and conserved domain: TIGR01073

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=95.25  E-value=0.064  Score=34.97  Aligned_cols=185  Identities=16%  Similarity=0.131  Sum_probs=100.4

Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             71899819989999999999999312976899976411478985854256808666788999966507888876200114
Q gi|254780229|r 1513 ESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKNLENVQGDERDRIFISFTYGPHEPGGRVFQRFG 1592 (1775)
Q Consensus      1513 ~siGVvt~~~~Q~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~fvknle~vQGdERDvI~~S~~yg~~~~~g~~~~~fG 1592 (1775)
T Consensus       585 es~~~L~dFL~~~aL~~D~-D~l----~~~E----~~~~Gdg~VtLMTLHaAKGLEFPVVFL-~G--l--EeG~FPh~-R  649 (811)
T TIGR01073       585 ESIKSLVDFLTDLALVSDL-DDL----EEEE----EEAEGDGAVTLMTLHAAKGLEFPVVFL-IG--L--EEGVFPHS-R  649 (811)
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHC----CCCH----HHCCCCCEEEEHHHHCCCCCCCCEEEE-CC--C--CCCCCHHH-H
T ss_conf             0033799999878765424-433----6540----113799648631343025677762565-48--7--65567213-4


Q ss_pred             CCC--CCCH---HHHHH-HHHHHHCCEEEEEECCCHH---HCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             777--6562---46899-9998321426988703878---8796653543489999999997406422345578666899
Q gi|254780229|r 1593 PIN--SDIG---WRRLN-VLFTRSRRRIEVFSTMRYL---DVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDS 1663 (1775)
Q Consensus      1593 pln--~~gg---~rRlN-Va~sRAr~~~~v~~s~~~~---~i~~~~~~~~g~~~lk~~l~~a~~g~~~~~~~~~~~~~ds 1663 (1775)
T Consensus       650 sL~~~d~~~lEEERRLAYVGITRA~~~LyLT~A~~R~lfG~~~~~~PSRFl~EIP~~lLe~~~~g-~~~~~~a~~~~~~~  728 (811)
T TIGR01073       650 SLMEDDEKELEEERRLAYVGITRAEEELYLTHATSRTLFGRIQMNPPSRFLNEIPDELLETASTG-RRTATSAPALDVKA  728 (811)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHCCCC-CCCCCCCCCCCCCC
T ss_conf             04767811356788888666554431000100334253223368987542330897772010047-87665443346567


Q ss_pred             HHHH----HHHHHHHHCCCEEEECCCCCCEECCEEEEC----CCCCCCEEEEEECCCH
Q ss_conf             8999----999999978998970657577101257336----8988831799974580
Q gi|254780229|r 1664 DFAV----SVVNELEKTGFACDSQLGDMGFSIDVVVRD----PNNPGHYLMGIECDGA 1713 (1775)
Q Consensus      1664 ~fe~----~v~~~L~~~G~~v~~qvg~~~~riDl~v~~----p~~pg~~~l~iecDG~ 1713 (1775)
T Consensus       729 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~vGDrv~H~~fG~GTVv~v~G~G~  786 (811)
T TIGR01073       729 PLSRQKQRSRPTTSQATGVAKIRSAVAGGDTLSWAVGDRVSHKKFGVGTVVSVKGKGD  786 (811)
T ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCC
T ss_conf             7222124322221056553100235666563244058610343000058988850555