HHsearch alignment for GI: 254780229 and conserved domain: TIGR01073
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=95.25 E-value=0.064 Score=34.97 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=100.4
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 71899819989999999999999312976899976411478985854256808666788999966507888876200114
Q gi|254780229|r 1513 ESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKNLENVQGDERDRIFISFTYGPHEPGGRVFQRFG 1592 (1775)
Q Consensus 1513 ~siGVvt~~~~Q~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~fvknle~vQGdERDvI~~S~~yg~~~~~g~~~~~fG 1592 (1775)
T Consensus 585 es~~~L~dFL~~~aL~~D~-D~l----~~~E----~~~~Gdg~VtLMTLHaAKGLEFPVVFL-~G--l--EeG~FPh~-R 649 (811)
T TIGR01073 585 ESIKSLVDFLTDLALVSDL-DDL----EEEE----EEAEGDGAVTLMTLHAAKGLEFPVVFL-IG--L--EEGVFPHS-R 649 (811)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHC----CCCH----HHCCCCCEEEEHHHHCCCCCCCCEEEE-CC--C--CCCCCHHH-H
T ss_conf 0033799999878765424-433----6540----113799648631343025677762565-48--7--65567213-4
Q ss_pred CCC--CCCH---HHHHH-HHHHHHCCEEEEEECCCHH---HCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 777--6562---46899-9998321426988703878---8796653543489999999997406422345578666899
Q gi|254780229|r 1593 PIN--SDIG---WRRLN-VLFTRSRRRIEVFSTMRYL---DVVVDIDSKLGIRVMRDFLHFAETGYMEHSLKTKTNKQDS 1663 (1775)
Q Consensus 1593 pln--~~gg---~rRlN-Va~sRAr~~~~v~~s~~~~---~i~~~~~~~~g~~~lk~~l~~a~~g~~~~~~~~~~~~~ds 1663 (1775)
T Consensus 650 sL~~~d~~~lEEERRLAYVGITRA~~~LyLT~A~~R~lfG~~~~~~PSRFl~EIP~~lLe~~~~g-~~~~~~a~~~~~~~ 728 (811)
T TIGR01073 650 SLMEDDEKELEEERRLAYVGITRAEEELYLTHATSRTLFGRIQMNPPSRFLNEIPDELLETASTG-RRTATSAPALDVKA 728 (811)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHCCCC-CCCCCCCCCCCCCC
T ss_conf 04767811356788888666554431000100334253223368987542330897772010047-87665443346567
Q ss_pred HHHH----HHHHHHHHCCCEEEECCCCCCEECCEEEEC----CCCCCCEEEEEECCCH
Q ss_conf 8999----999999978998970657577101257336----8988831799974580
Q gi|254780229|r 1664 DFAV----SVVNELEKTGFACDSQLGDMGFSIDVVVRD----PNNPGHYLMGIECDGA 1713 (1775)
Q Consensus 1664 ~fe~----~v~~~L~~~G~~v~~qvg~~~~riDl~v~~----p~~pg~~~l~iecDG~ 1713 (1775)
T Consensus 729 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~vGDrv~H~~fG~GTVv~v~G~G~ 786 (811)
T TIGR01073 729 PLSRQKQRSRPTTSQATGVAKIRSAVAGGDTLSWAVGDRVSHKKFGVGTVVSVKGKGD 786 (811)
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCC
T ss_conf 7222124322221056553100235666563244058610343000058988850555