HHsearch alignment for GI: 254780229 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.77 E-value=0.0012 Score=53.10 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=25.8
Q ss_pred HHHCCCCEE-EECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 851489559-94287877038999999999967
Q gi|254780229|r 415 DVINGKNLI-IEGPPGTGKSQTITNIIAAAMLH 446 (1775)
Q Consensus 415 ~~~~g~~~v-i~GPPGTGKSQTIaNlIa~~la~ 446 (1775)
T Consensus 122 ~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~ 154 (350)
T TIGR01420 122 LAERPRGLILVTGPTGSGKSTTLASMIDYINKN 154 (350)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 983669938987688986789999999787403