HHsearch alignment for GI: 254780229 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.18 E-value=0.0012 Score=52.96 Aligned_cols=43 Identities=35% Similarity=0.419 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 66773468999998514895599428787703899999999996
Q gi|254780229|r 402 IDDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAML 445 (1775)
Q Consensus 402 ~~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la 445 (1775)
T Consensus 348 ~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKt-T~t~~i~~~~~ 390 (769)
T TIGR01448 348 RLKLSEEQKEALKTAIQDKVVILTGGPGTGKT-TITKAIIELYE 390 (769)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHH-HHHHHHHHHHH
T ss_conf 67706889999999860948998577888616-89999999998