HHsearch alignment for GI: 254780229 and conserved domain: TIGR02768
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=96.13 E-value=0.0033 Score=48.42 Aligned_cols=40 Identities=30% Similarity=0.563 Sum_probs=28.9
Q ss_pred CCCEEEECCHHHCCH---HHHHH-HHHHCCEEEEEECCCCCCCC
Q ss_conf 410788606323698---99889-88611828996077866862
Q gi|254780229|r 1361 KFDLVIMDESSQIKP---EDALG-VIARGKQIVVVGDPKQLPPT 1400 (1775)
Q Consensus 1361 ~FD~VI~DEASQ~~~---~~al~-al~rakqvvvvGD~kQlpPt 1400 (1775)
T Consensus 501 ~~dvLviDEAGMV~S~Qm~r~l~~A~~AGaKvVLvGD~~QLqaI 544 (888)
T TIGR02768 501 DKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQAI 544 (888)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCHH
T ss_conf 77668985154414677889999998727605984885782442