HHsearch alignment for GI: 254780229 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.79 E-value=0.14 Score=31.53 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred HHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHH---H-CCCEEEEEECCHH
Q ss_conf 998514-89559942878770389999999999---6-7982899601058
Q gi|254780229|r 413 VIDVIN-GKNLIIEGPPGTGKSQTITNIIAAAM---L-HGKKILFCAQKMA 458 (1775)
Q Consensus 413 v~~~~~-g~~~vi~GPPGTGKSQTIaNlIa~~l---a-~Gk~VLfVaeK~a 458 (1775)
T Consensus 9 ~~~a~~~~~v~lVEAGTGTGKS--LAYLvPAl~~a~~~~g~rVVISTaT~a 57 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKT--LAMIMAALTMLKERPDQKIAIAVPTLA 57 (636)
T ss_pred HHHHHHCCCEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 9998603848999899971088--999999999998579998899798799