HHsearch alignment for GI: 254780229 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.00074 Score=55.16 Aligned_cols=40 Identities=38% Similarity=0.742 Sum_probs=30.3
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEE
Q ss_conf 985148955994287877038999999999967-98289960
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLH-GKKILFCA 454 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~-Gk~VLfVa 454 (1775)
T Consensus 14 ~~~~~~~~ill~GppGtGKT-~la~~ia~~~~~~~~~~~~~~ 54 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKT-TLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred HHCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEE
T ss_conf 81879980899899998865-999999997121379827854