HHsearch alignment for GI: 254780229 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.06  E-value=0.0043  Score=47.18  Aligned_cols=63  Identities=21%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCC
Q ss_conf             95599428787703899999999996--798289960105899999986443584-4136540266
Q gi|254780229|r  420 KNLIIEGPPGTGKSQTITNIIAAAML--HGKKILFCAQKMAAIEVVRHRLEKAGL-GEFCLELHSH  482 (1775)
Q Consensus       420 ~~~vi~GPPGTGKSQTIaNlIa~~la--~Gk~VLfVaeK~aALdVV~~RL~~~gL-g~~cleLHs~  482 (1775)
T Consensus         1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~   66 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGG   66 (144)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             999998899717999999999999975689769997467999999999999974887179999613