HHsearch alignment for GI: 254780229 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.61 E-value=0.035 Score=37.64 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH-H----CCCEEEEEECCHHHHHHHHHHHHHC--CCCCEEEECC
Q ss_conf 6899999851489559942878770389999999999-6----7982899601058999999864435--8441365402
Q gi|254780229|r 408 SQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAM-L----HGKKILFCAQKMAAIEVVRHRLEKA--GLGEFCLELH 480 (1775)
Q Consensus 408 SQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~l-a----~Gk~VLfVaeK~aALdVV~~RL~~~--gLg~~cleLH 480 (1775)
T Consensus 25 IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~ 104 (203)
T cd00268 25 IQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIY 104 (203)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999999977998899757997222888869999986166768966999968799999999999985057983899983
Q ss_pred CCC
Q ss_conf 661
Q gi|254780229|r 481 SHK 483 (1775)
Q Consensus 481 s~k 483 (1775)
T Consensus 105 gg~ 107 (203)
T cd00268 105 GGT 107 (203)
T ss_pred CCC
T ss_conf 898