HHsearch alignment for GI: 254780229 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.44 E-value=0.008 Score=44.38 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=42.0
Q ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 51489559942878770389999999999-679828996010589999998644
Q gi|254780229|r 416 VINGKNLIIEGPPGTGKSQTITNIIAAAM-LHGKKILFCAQKMAAIEVVRHRLE 468 (1775)
Q Consensus 416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~l-a~Gk~VLfVaeK~aALdVV~~RL~ 468 (1775)
T Consensus 10 ~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~~~~R~~s 63 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLA 63 (242)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 999818999968999999999999999999779959999333538899999999