HHsearch alignment for GI: 254780229 and conserved domain: cd01037

>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Probab=96.96  E-value=0.0027  Score=49.35  Aligned_cols=74  Identities=22%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHCCCEEEE---CCCCCCEECCEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHH---HHHHHHHHHCCC
Q ss_conf             8999999999978998970---6575771012573368988831799974580236832486777---444899995699
Q gi|254780229|r 1664 DFAVSVVNELEKTGFACDS---QLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRD---RLRQEVLERMGW 1737 (1775)
Q Consensus      1664 ~fe~~v~~~L~~~G~~v~~---qvg~~~~riDl~v~~p~~pg~~~l~iecDG~~yh~~~~ardrD---~~Rq~vLe~~GW 1737 (1775)
T Consensus         1 ~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~pDf~~~------~~~l~iE~k~~~~~~~~~~-~~~~~~~~~~~~~~~~g~   73 (80)
T cd01037           1 AAERLLWKLLRAKGLAVRRFRRQVPIGSYIPDFVCP------SAKLVIELKGTFHDGLLRK-LRTSEKQERIAFLEADGK   73 (80)
T ss_pred             CHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECC------CCCEEEEECCCHHCCCHHH-HHHHHHHHHHHHHHHCCC
T ss_conf             979999999985587887057137507887757725------4487999145121531355-544117789999998899


Q ss_pred             CEEEEEC
Q ss_conf             0999322
Q gi|254780229|r 1738 RIRRIWS 1744 (1775)
Q Consensus      1738 ~~~Riws 1744 (1775)
T Consensus        74 ~~~~~~~   80 (80)
T cd01037          74 KVLRFWN   80 (80)
T ss_pred             EEEEECC
T ss_conf             8997439