HHsearch alignment for GI: 254780229 and conserved domain: cd01037
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Probab=96.96 E-value=0.0027 Score=49.35 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHCCCEEEE---CCCCCCEECCEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHH---HHHHHHHHHCCC
Q ss_conf 8999999999978998970---6575771012573368988831799974580236832486777---444899995699
Q gi|254780229|r 1664 DFAVSVVNELEKTGFACDS---QLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRD---RLRQEVLERMGW 1737 (1775)
Q Consensus 1664 ~fe~~v~~~L~~~G~~v~~---qvg~~~~riDl~v~~p~~pg~~~l~iecDG~~yh~~~~ardrD---~~Rq~vLe~~GW 1737 (1775)
T Consensus 1 ~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~pDf~~~------~~~l~iE~k~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 73 (80)
T cd01037 1 AAERLLWKLLRAKGLAVRRFRRQVPIGSYIPDFVCP------SAKLVIELKGTFHDGLLRK-LRTSEKQERIAFLEADGK 73 (80)
T ss_pred CHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECC------CCCEEEEECCCHHCCCHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 979999999985587887057137507887757725------4487999145121531355-544117789999998899
Q ss_pred CEEEEEC
Q ss_conf 0999322
Q gi|254780229|r 1738 RIRRIWS 1744 (1775)
Q Consensus 1738 ~~~Riws 1744 (1775)
T Consensus 74 ~~~~~~~ 80 (80)
T cd01037 74 KVLRFWN 80 (80)
T ss_pred EEEEECC
T ss_conf 8997439