HHsearch alignment for GI: 254780229 and conserved domain: cd01038
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=98.71 E-value=1.3e-07 Score=94.33 Aligned_cols=92 Identities=25% Similarity=0.391 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHC---CCEEEECCCCCCEECCEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 998999999999978---99897065757710125733689888317999745802368324867774448999956990
Q gi|254780229|r 1662 DSDFAVSVVNELEKT---GFACDSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWR 1738 (1775)
Q Consensus 1662 ds~fe~~v~~~L~~~---G~~v~~qvg~~~~riDl~v~~p~~pg~~~l~iecDG~~yh~~~~ardrD~~Rq~vLe~~GW~ 1738 (1775)
T Consensus 13 ~T~aE~~LW~~Lr~~~l~g~kFrRQ~pIg~yIvDF~c~~------~rLvIElDG~-~H~~~~--~~D~~Rd~~L~~~G~~ 83 (108)
T cd01038 13 QTDAERLLWQELRRRRLNGFKFRRQAPIGRYIVDFACPE------AKLVVELDGG-QHDEQI--AYDAERDAWLEARGFR 83 (108)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEECCCEECCEEEEEEEHH------HCCEEEECCC-CCCCHH--HHHHHHHHHHHHCCCE
T ss_conf 999999999999855877983455572679778886042------1826685685-422005--6799999999979998
Q ss_pred EEEEECHHHHCCHHHHHHHHHHHH
Q ss_conf 999322164117899999999999
Q gi|254780229|r 1739 IRRIWSVDWFSNPDEVIEPIIREL 1762 (1775)
Q Consensus 1739 ~~Riws~dw~~~p~~~~~~l~~~l 1762 (1775)
T Consensus 84 VlRf~n~eV~~~~~~Vl~~I~~~l 107 (108)
T cd01038 84 VLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred EEEEEHHHHHHCHHHHHHHHHHHH
T ss_conf 999888998868999999999975