HHsearch alignment for GI: 254780229 and conserved domain: cd01038

>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=98.71  E-value=1.3e-07  Score=94.33  Aligned_cols=92  Identities=25%  Similarity=0.391  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHC---CCEEEECCCCCCEECCEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             998999999999978---99897065757710125733689888317999745802368324867774448999956990
Q gi|254780229|r 1662 DSDFAVSVVNELEKT---GFACDSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAKSARDRDRLRQEVLERMGWR 1738 (1775)
Q Consensus      1662 ds~fe~~v~~~L~~~---G~~v~~qvg~~~~riDl~v~~p~~pg~~~l~iecDG~~yh~~~~ardrD~~Rq~vLe~~GW~ 1738 (1775)
T Consensus        13 ~T~aE~~LW~~Lr~~~l~g~kFrRQ~pIg~yIvDF~c~~------~rLvIElDG~-~H~~~~--~~D~~Rd~~L~~~G~~   83 (108)
T cd01038          13 QTDAERLLWQELRRRRLNGFKFRRQAPIGRYIVDFACPE------AKLVVELDGG-QHDEQI--AYDAERDAWLEARGFR   83 (108)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCEECCCEECCEEEEEEEHH------HCCEEEECCC-CCCCHH--HHHHHHHHHHHHCCCE
T ss_conf             999999999999855877983455572679778886042------1826685685-422005--6799999999979998


Q ss_pred             EEEEECHHHHCCHHHHHHHHHHHH
Q ss_conf             999322164117899999999999
Q gi|254780229|r 1739 IRRIWSVDWFSNPDEVIEPIIREL 1762 (1775)
Q Consensus      1739 ~~Riws~dw~~~p~~~~~~l~~~l 1762 (1775)
T Consensus        84 VlRf~n~eV~~~~~~Vl~~I~~~l  107 (108)
T cd01038          84 VLRFWNNEVLRNIEAVLEAILAAL  107 (108)
T ss_pred             EEEEEHHHHHHCHHHHHHHHHHHH
T ss_conf             999888998868999999999975