HHsearch alignment for GI: 254780229 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.86 E-value=0.0067 Score=45.18 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=43.8
Q ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 514895599428787703899999999996-798289960105899999986443
Q gi|254780229|r 416 VINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAIEVVRHRLEK 469 (1775)
Q Consensus 416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aALdVV~~RL~~ 469 (1775)
T Consensus 27 l~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQ 81 (271)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 9998089999689986999999999999997699089997049999999999999