HHsearch alignment for GI: 254780229 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

Probab=95.95  E-value=0.017  Score=40.83  Aligned_cols=47  Identities=32%  Similarity=0.507  Sum_probs=32.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCC-------------EEEEEECCHHHHHHHHHHHHHC
Q ss_conf             599428787703899999999996798-------------2899601058999999864435
Q gi|254780229|r  422 LIIEGPPGTGKSQTITNIIAAAMLHGK-------------KILFCAQKMAAIEVVRHRLEKA  470 (1775)
Q Consensus       422 ~vi~GPPGTGKSQTIaNlIa~~la~Gk-------------~VLfVaeK~aALdVV~~RL~~~  470 (1775)
T Consensus         4 ~~l~g~gG~GKS-~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~-~~~l~rRl~a~   63 (239)
T cd01125           4 SALVAPGGTGKS-SLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP-REEIHRRLEAI   63 (239)
T ss_pred             EEEEECCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC-HHHHHHHHHHH
T ss_conf             999808998889-9999999999759965689854687761999978899-89999999999