HHsearch alignment for GI: 254780229 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=96.02 E-value=0.038 Score=37.29 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=37.1
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 55994287877038999999999967982899601058999999864435844136540
Q gi|254780229|r 421 NLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLEL 479 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleL 479 (1775)
T Consensus 1 H~lvig~tGsGKt~~~--vip~ll~~~~s~vv~D~Kgel~~~t~~~~~~~G~~v~v~np 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGF--VIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CEEEECCCCCCHHHHH--HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9799889999731899--99999818998899948789999999999987996899818