HHsearch alignment for GI: 254780229 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=96.80  E-value=0.0023  Score=49.95  Aligned_cols=40  Identities=23%  Similarity=0.418  Sum_probs=35.0

Q ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf             8955994287877038999999999967982899601058
Q gi|254780229|r  419 GKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMA  458 (1775)
Q Consensus       419 g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~a  458 (1775)
T Consensus        42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe   81 (410)
T cd01127          42 EAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGG   81 (410)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             2747998899998899999999999986990999958854