HHsearch alignment for GI: 254780229 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.43 E-value=0.13 Score=31.68 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=34.8
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CE-E---EEEECCHHHHHHHHHHH
Q ss_conf 851489559942878770389999999999679-82-8---99601058999999864
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAMLHG-KK-I---LFCAQKMAAIEVVRHRL 467 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~G-k~-V---LfVaeK~aALdVV~~RL 467 (1775)
T Consensus 12 pigkGQR~gI~g~~gvGKT-~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~ 68 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKT-TLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 6167867788789998899-99999999999858984999999716579999999971