HHsearch alignment for GI: 254780229 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0024 Score=49.76 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=38.2
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 985148955994287877038999999999967982899601058999
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIE 461 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALd 461 (1775)
T Consensus 20 ~~v~~~~nIlIsG~tGSGKT-Tll~al~~~i~~~~riv-tiEd~~El~ 65 (186)
T cd01130 20 LAVEARKNILISGGTGSGKT-TLLNALLAFIPPDERII-TIEDTAELQ 65 (186)
T ss_pred HHHHCCCCEEEECCCCCCHH-HHHHHHHHHCCCCCCEE-EECCCHHHC
T ss_conf 99985998999899999899-99999996133456459-841535404