HHsearch alignment for GI: 254780229 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.22 E-value=0.034 Score=37.80 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=28.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHH
Q ss_conf 599428787703899999999996-7982899601058
Q gi|254780229|r 422 LIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMA 458 (1775)
Q Consensus 422 ~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~a 458 (1775)
T Consensus 2 ~~~sGKGGVGKT-TvAaalA~~lA~~G~rvLlvs~DPa 38 (217)
T cd02035 2 IFFTGKGGVGKT-TIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 899789966199-9999999999968994999958987