HHsearch alignment for GI: 254780229 and conserved domain: cd03239

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.06  E-value=0.047  Score=36.34  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             55994287877038999999999967
Q gi|254780229|r  421 NLIIEGPPGTGKSQTITNIIAAAMLH  446 (1775)
Q Consensus       421 ~~vi~GPPGTGKSQTIaNlIa~~la~  446 (1775)
T Consensus        24 ~~~ivG~nGsGKS-ni~~ai~~~~g~   48 (178)
T cd03239          24 FNAIVGPNGSGKS-NIVDAICFVLGG   48 (178)
T ss_pred             EEEEECCCCCCHH-HHHHHHHHHHCC
T ss_conf             1799899988778-999999999866