HHsearch alignment for GI: 254780229 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.06 E-value=0.047 Score=36.34 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.5
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 55994287877038999999999967
Q gi|254780229|r 421 NLIIEGPPGTGKSQTITNIIAAAMLH 446 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTIaNlIa~~la~ 446 (1775)
T Consensus 24 ~~~ivG~nGsGKS-ni~~ai~~~~g~ 48 (178)
T cd03239 24 FNAIVGPNGSGKS-NIVDAICFVLGG 48 (178)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHCC
T ss_conf 1799899988778-999999999866