HHsearch alignment for GI: 254780229 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.39 E-value=0.013 Score=42.01 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=38.2
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCHHHH--HHHHHHH
Q ss_conf 8514895599428787703899999999996-798289960105899--9999864
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCAQKMAAI--EVVRHRL 467 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVaeK~aAL--dVV~~RL 467 (1775)
T Consensus 36 ~i~~Ge~vaIvG~sGsGKS-TL~~ll~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 90 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKS-TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90 (226)
T ss_pred EECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCE
T ss_conf 9829999999999998499-999999645467887899999993448999997326