HHsearch alignment for GI: 254780229 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.03 Score=38.31 Aligned_cols=44 Identities=30% Similarity=0.511 Sum_probs=31.1
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCHHH
Q ss_conf 851489559942878770389999999999679-828996010589
Q gi|254780229|r 415 DVINGKNLIIEGPPGTGKSQTITNIIAAAMLHG-KKILFCAQKMAA 459 (1775)
Q Consensus 415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~G-k~VLfVaeK~aA 459 (1775)
T Consensus 24 ~i~~Ge~i~IvG~sGsGKS-TLl~ll~gl~~p~~G~I~i~g~~i~~ 68 (234)
T cd03251 24 DIPAGETVALVGPSGSGKS-TLVNLIPRFYDVDSGRILIDGHDVRD 68 (234)
T ss_pred EECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 9879999999989998299-99999966766788689999999660