HHsearch alignment for GI: 254780229 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.14 E-value=0.034 Score=37.78 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=31.5
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEE
Q ss_conf 98514895599428787703899999999996-798289960
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAML-HGKKILFCA 454 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la-~Gk~VLfVa 454 (1775)
T Consensus 26 l~i~~Ge~~~iiG~sGsGKS-TLl~~i~Gl~~p~~G~I~~~g 66 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKS-TLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred EEECCCCEEEEECCCCCHHH-HHHHHHHCCCCCCCCEEEECC
T ss_conf 89869989999999998699-999999728987886699899