HHsearch alignment for GI: 254780229 and conserved domain: cd03279
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.64 E-value=0.0017 Score=51.29 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=24.4
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 55994287877038999999999967982
Q gi|254780229|r 421 NLIIEGPPGTGKSQTITNIIAAAMLHGKK 449 (1775)
Q Consensus 421 ~~vi~GPPGTGKSQTIaNlIa~~la~Gk~ 449 (1775)
T Consensus 30 lflI~G~nGsGKS-TIlDAI~~aLY-Gk~ 56 (213)
T cd03279 30 LFLICGPTGAGKS-TILDAITYALY-GKT 56 (213)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHC-CCC
T ss_conf 8999889999788-99999999983-888