HHsearch alignment for GI: 254780229 and conserved domain: pfam00693
>pfam00693 Herpes_TK Thymidine kinase from herpesvirus.
Probab=94.08 E-value=0.06 Score=35.24 Aligned_cols=38 Identities=34% Similarity=0.456 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 287877038999999999967982899601058999999
Q gi|254780229|r 426 GPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVR 464 (1775)
Q Consensus 426 GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~ 464 (1775)
T Consensus 1 G~~GiGKT-Tt~~~l~~~~~~~~~~lyvpEPMaYWR~~f 38 (279)
T pfam00693 1 GAHGIGKT-TTARALAAASSAGGPILYVPEPMAYWRTLF 38 (279)
T ss_pred CCCCCCHH-HHHHHHHHHCCCCCCEEECCCHHHHHHHHC
T ss_conf 99763577-799999861367897576276289999875