HHsearch alignment for GI: 254780229 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=96.74 E-value=0.0033 Score=48.41 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=38.3
Q ss_pred HCCCCEEEECCCCCCCHHHHH-HHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 148955994287877038999-9999999-6798289960105899999986443584
Q gi|254780229|r 417 INGKNLIIEGPPGTGKSQTIT-NIIAAAM-LHGKKILFCAQKMAAIEVVRHRLEKAGL 472 (1775)
Q Consensus 417 ~~g~~~vi~GPPGTGKSQTIa-NlIa~~l-a~Gk~VLfVaeK~aALdVV~~RL~~~gL 472 (1775)
T Consensus 17 ~~gs~~LI~G~pGsGKT-~la~qfl~~ga~~~ge~~lYis~ee~~~~l-~~~~~~~g~ 72 (231)
T pfam06745 17 PEGRVVLITGGPGTGKT-IFGLQFLYNGALEYGEPGVYVTLEEPPEDL-RENAKSFGW 72 (231)
T ss_pred CCCEEEEEECCCCCCHH-HHHHHHHHHHHHHCCCCEEEEEECCCHHHH-HHHHHHCCC
T ss_conf 29969999858972599-999999999998658968999813799999-999998299